RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 UNQ9370/PRO34162Q6UXP9 181 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 ABHD12Q8N2K0 398 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 TMEM186Q96B77 213 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 PRELID3AQ96N28 172 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 SLC25A17O43808 307 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 MIC13Q5XKP0 118 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 NEU1Q99519 415 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 CLEC7AQ9BXN2 247 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 IGKV3OR2-268A0A0C4DH90 116 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 ODAMA1E959 279 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 IGKV1D-16P01601 117 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 SUMO2P61956 95 aaKnown RBP11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 OR4D5Q8NGN0 318 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 LHFPL5Q8TAF8 219 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 NPIPB11E5RHQ5 1161 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 H7C1H1 209 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 TMEM252Q8N6L7 170 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 SFXN3Q9BWM7 321 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 IL11P20809 199 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 ATP5J2P56134 94 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 HSPE1P61604 102 aaKnown RBP11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 LY6EQ16553 131 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 FGFRL1Q8N441 504 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 DTX4Q9Y2E6 619 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 PLA2G10O15496 165 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 LIPFP07098 398 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 NANOS3P60323 173 aaKnown RBP11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 TUBA4BQ9H853 241 aa11.01□□□□□ -0.65
CCDC88C-204ENST00000389857 TSPAN2O60636 221 aa11□□□□□ -0.65
CCDC88C-204ENST00000389857 FOXH1O75593 365 aa11□□□□□ -0.65
CCDC88C-204ENST00000389857 IL4P05112 153 aa11□□□□□ -0.65
CCDC88C-204ENST00000389857 FGF5P12034 268 aa11□□□□□ -0.65
CCDC88C-204ENST00000389857 FAM74A4Q5TZK3 123 aa11□□□□□ -0.65
CCDC88C-204ENST00000389857 NRTNQ99748 197 aa11□□□□□ -0.65
CCDC88C-204ENST00000389857 FHL5Q5TD97 284 aa11□□□□□ -0.65
CCDC88C-204ENST00000389857 PTGDSP41222 190 aa11□□□□□ -0.65
CCDC88C-204ENST00000389857 CACNG7P62955 275 aa11□□□□□ -0.65
CCDC88C-204ENST00000389857 TNFRSF9Q07011 255 aa11□□□□□ -0.65
CCDC88C-204ENST00000389857 C8orf82Q6P1X6 216 aaPredicted RBP11□□□□□ -0.65
CCDC88C-204ENST00000389857 SLC25A47Q6Q0C1 308 aa11□□□□□ -0.65
CCDC88C-204ENST00000389857 OR9G1Q8NH87 305 aa11□□□□□ -0.65
CCDC88C-204ENST00000389857 SNRPCP09234 159 aaKnown RBP11□□□□□ -0.65
CCDC88C-204ENST00000389857 HKR1P10072 659 aa11□□□□□ -0.65
CCDC88C-204ENST00000389857 BEND2Q8NDZ0 799 aa11□□□□□ -0.65
CCDC88C-204ENST00000389857 HIST1H1AQ02539 215 aaPredicted RBP11□□□□□ -0.65
CCDC88C-204ENST00000389857 ZPLD1Q8TCW7 415 aa11□□□□□ -0.65
CCDC88C-204ENST00000389857 ZNF729A6NN14 1252 aaPredicted RBP10.99□□□□□ -0.65
CCDC88C-204ENST00000389857 C1QAP02745 245 aa10.99□□□□□ -0.65
CCDC88C-204ENST00000389857 TRGC2P03986 189 aa10.99□□□□□ -0.65
CCDC88C-204ENST00000389857 MBNL2Q5VZF2 373 aaKnown RBP10.99□□□□□ -0.65
CCDC88C-204ENST00000389857 RHOVQ96L33 236 aa10.99□□□□□ -0.65
CCDC88C-204ENST00000389857 ELOVL5Q9NYP7 299 aa10.99□□□□□ -0.65
CCDC88C-204ENST00000389857 VSIG10L2P0DP72 767 aa10.99□□□□□ -0.65
CCDC88C-204ENST00000389857 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.99□□□□□ -0.65
CCDC88C-204ENST00000389857 CXorf65A6NEN9 183 aa10.99□□□□□ -0.65
CCDC88C-204ENST00000389857 ZNF646O15015 1829 aaPredicted RBP10.99□□□□□ -0.65
CCDC88C-204ENST00000389857 AQP3Q92482 292 aa10.99□□□□□ -0.65
CCDC88C-204ENST00000389857 PARLQ9H300 379 aa10.99□□□□□ -0.65
CCDC88C-204ENST00000389857 F11RQ9Y624 299 aaKnown RBP10.99□□□□□ -0.65
CCDC88C-204ENST00000389857 MARCH11A6NNE9 402 aa10.99□□□□□ -0.65
CCDC88C-204ENST00000389857 SMIM13P0DJ93 91 aa10.99□□□□□ -0.65
CCDC88C-204ENST00000389857 ATP5IP56385 69 aaPredicted RBP10.99□□□□□ -0.65
CCDC88C-204ENST00000389857 RPS11P62280 158 aaKnown RBP eCLIP10.99□□□□□ -0.65
CCDC88C-204ENST00000389857 C10orf111Q8N326 155 aa10.99□□□□□ -0.65
CCDC88C-204ENST00000389857 TRBV5-3A0A0A0MS03 114 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 LNP1A1A4G5 178 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 AGAP20933 346 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 NPBWR2P48146 333 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 ZNF79Q15937 498 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 SAPCD1Q5SSQ6 148 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 SPOCK3Q9BQ16 436 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 PARD6GQ9BYG4 376 aaPredicted RBP10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 CD160O95971 181 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 FCARP24071 287 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 TMEM52Q8NDY8 209 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 AQP10Q96PS8 301 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 TLNRD1Q9H1K6 362 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 DLL3Q9NYJ7 618 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 IGHV1-69-2A0A0G2JMI3 117 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 TRBV5-5A0A0J9YX44 114 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 CEACAM4O75871 244 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 REG1AP05451 166 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 KLK15Q9H2R5 256 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 TNFRSF18Q9Y5U5 241 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 KIAA0100Q14667 2235 aaKnown RBP10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 ZNF826PQ6ZT77 177 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 GPR146Q96CH1 333 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 FXYD3Q14802 87 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 COX5BP10606 129 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 NAT1P18440 290 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 CXCL2P19875 107 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 C10orf126Q8N4M7 172 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 MS4A3Q96HJ5 214 aa10.98□□□□□ -0.65
CCDC88C-204ENST00000389857 ASCC3Q8N3C0 2202 aaKnown RBP10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 KCNK17Q96T54 332 aa10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 TRBV20OR9-2A0A075B6H5 130 aa10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 ZNF250P15622 560 aa10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 SRIP30626 198 aa10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 UNC119Q13432 240 aa10.97□□□□□ -0.65
CCDC88C-204ENST00000389857 ZNF385CQ66K41 422 aaPredicted RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms