RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 RHOVQ96L33 236 aa16.77■□□□□ 0.28
CCDC28B-201ENST00000373602 ST6GALNAC5Q9BVH7 336 aa16.77■□□□□ 0.28
CCDC28B-201ENST00000373602 IGHV4OR15-8A0A075B7B6 117 aa16.76■□□□□ 0.27
CCDC28B-201ENST00000373602 A0A087WW49 117 aa16.76■□□□□ 0.27
CCDC28B-201ENST00000373602 TMEM235A6NFC5 223 aa16.76■□□□□ 0.27
CCDC28B-201ENST00000373602 SHOXO15266 292 aa16.76■□□□□ 0.27
CCDC28B-201ENST00000373602 CNIH1O95406 144 aa16.76■□□□□ 0.27
CCDC28B-201ENST00000373602 CTXN2P0C2S0 81 aa16.76■□□□□ 0.27
CCDC28B-201ENST00000373602 SLURP1P55000 103 aa16.76■□□□□ 0.27
CCDC28B-201ENST00000373602 TPPP2P59282 170 aa16.76■□□□□ 0.27
CCDC28B-201ENST00000373602 PITPNAQ00169 270 aa16.76■□□□□ 0.27
CCDC28B-201ENST00000373602 NUDCD2Q8WVJ2 157 aa16.76■□□□□ 0.27
CCDC28B-201ENST00000373602 DLX4Q92988 240 aaPredicted RBP16.76■□□□□ 0.27
CCDC28B-201ENST00000373602 IGHV3-11P01762 117 aa16.75■□□□□ 0.27
CCDC28B-201ENST00000373602 TRGV3P03979 118 aa16.75■□□□□ 0.27
CCDC28B-201ENST00000373602 HSPB1P04792 205 aaKnown RBP16.75■□□□□ 0.27
CCDC28B-201ENST00000373602 CLEC2LP0C7M8 214 aa16.75■□□□□ 0.27
CCDC28B-201ENST00000373602 ZNF429Q86V71 674 aa16.75■□□□□ 0.27
CCDC28B-201ENST00000373602 POC5Q8NA72 575 aa16.75■□□□□ 0.27
CCDC28B-201ENST00000373602 TMEM68Q96MH6 324 aa16.75■□□□□ 0.27
CCDC28B-201ENST00000373602 RNF167Q9H6Y7 350 aa16.75■□□□□ 0.27
CCDC28B-201ENST00000373602 RHBDL2Q9NX52 303 aa16.75■□□□□ 0.27
CCDC28B-201ENST00000373602 ZNF256Q9Y2P7 627 aaPredicted RBP16.75■□□□□ 0.27
CCDC28B-201ENST00000373602 LINC00473A8K010 186 aa16.74■□□□□ 0.27
CCDC28B-201ENST00000373602 H3BUA1 57 aa16.74■□□□□ 0.27
CCDC28B-201ENST00000373602 SCAND1P57086 179 aa16.74■□□□□ 0.27
CCDC28B-201ENST00000373602 GNG2P59768 71 aa16.74■□□□□ 0.27
CCDC28B-201ENST00000373602 MXD1Q05195 221 aa16.74■□□□□ 0.27
CCDC28B-201ENST00000373602 MRGPRG-AS1Q2M3A8 158 aa16.74■□□□□ 0.27
CCDC28B-201ENST00000373602 KCTD21Q4G0X4 260 aa16.74■□□□□ 0.27
CCDC28B-201ENST00000373602 CNIH2Q6PI25 160 aa16.74■□□□□ 0.27
CCDC28B-201ENST00000373602 OR2W1Q9Y3N9 320 aa16.74■□□□□ 0.27
CCDC28B-201ENST00000373602 LOC100506127A0A0U1RQW1 187 aa16.73■□□□□ 0.27
CCDC28B-201ENST00000373602 SSX5O60225 188 aa16.73■□□□□ 0.27
CCDC28B-201ENST00000373602 HLA-DQB1P01920 261 aa16.73■□□□□ 0.27
CCDC28B-201ENST00000373602 CD36P16671 472 aa16.73■□□□□ 0.27
CCDC28B-201ENST00000373602 NFYAP23511 347 aaPredicted RBP16.73■□□□□ 0.27
CCDC28B-201ENST00000373602 UBE2KP61086 200 aa16.73■□□□□ 0.27
CCDC28B-201ENST00000373602 NEDD8Q15843 81 aa16.73■□□□□ 0.27
CCDC28B-201ENST00000373602 ZNF645Q8N7E2 425 aa16.73■□□□□ 0.27
CCDC28B-201ENST00000373602 TEX45Q8NA69 505 aa16.73■□□□□ 0.27
CCDC28B-201ENST00000373602 OR5T1Q8NG75 326 aa16.73■□□□□ 0.27
CCDC28B-201ENST00000373602 OR5H6Q8NGV6 325 aa16.73■□□□□ 0.27
CCDC28B-201ENST00000373602 ZNF355PQ9NSJ1 428 aa16.73■□□□□ 0.27
CCDC28B-201ENST00000373602 ETV7Q9Y603 341 aa16.73■□□□□ 0.27
CCDC28B-201ENST00000373602 J3QRK9 145 aa16.72■□□□□ 0.27
CCDC28B-201ENST00000373602 BRI3O95415 125 aa16.72■□□□□ 0.27
CCDC28B-201ENST00000373602 CRYZL1O95825 349 aa16.72■□□□□ 0.27
CCDC28B-201ENST00000373602 VMA21Q3ZAQ7 101 aa16.72■□□□□ 0.27
CCDC28B-201ENST00000373602 OSR1Q8TAX0 266 aaPredicted RBP16.72■□□□□ 0.27
CCDC28B-201ENST00000373602 SLC25A38Q96DW6 304 aa16.72■□□□□ 0.27
CCDC28B-201ENST00000373602 ANXA10Q9UJ72 324 aa16.72■□□□□ 0.27
CCDC28B-201ENST00000373602 SAP30O75446 220 aa16.71■□□□□ 0.27
CCDC28B-201ENST00000373602 SLC22A5O76082 557 aa16.71■□□□□ 0.27
CCDC28B-201ENST00000373602 PRSS8Q16651 343 aa16.71■□□□□ 0.27
CCDC28B-201ENST00000373602 IDNKQ5T6J7 187 aa16.71■□□□□ 0.27
CCDC28B-201ENST00000373602 ACSM6Q6P461 480 aa16.71■□□□□ 0.27
CCDC28B-201ENST00000373602 RBMX2Q9Y388 322 aaKnown RBP16.71■□□□□ 0.27
CCDC28B-201ENST00000373602 IGKV1D-13A0A0B4J2D9 117 aa16.7■□□□□ 0.26
CCDC28B-201ENST00000373602 IGLV2-14P01704 120 aa16.7■□□□□ 0.26
CCDC28B-201ENST00000373602 IGKV1-13P0DP09 117 aa16.7■□□□□ 0.26
CCDC28B-201ENST00000373602 A0A0A6YYH2 397 aa16.69■□□□□ 0.26
CCDC28B-201ENST00000373602 A0A0G2JLM5 398 aa16.69■□□□□ 0.26
CCDC28B-201ENST00000373602 C13orf42A0A1B0GVH6 325 aa16.69■□□□□ 0.26
CCDC28B-201ENST00000373602 A6NJ64 397 aa16.69■□□□□ 0.26
CCDC28B-201ENST00000373602 TUSC2O75896 110 aa16.69■□□□□ 0.26
CCDC28B-201ENST00000373602 LY86O95711 162 aa16.69■□□□□ 0.26
CCDC28B-201ENST00000373602 NHLRC4P0CG21 123 aaPredicted RBP16.69■□□□□ 0.26
CCDC28B-201ENST00000373602 IDO2Q6ZQW0 420 aa16.69■□□□□ 0.26
CCDC28B-201ENST00000373602 TINAGL1Q9GZM7 467 aaPredicted RBP16.69■□□□□ 0.26
CCDC28B-201ENST00000373602 RANGRFQ9HD47 186 aaPredicted RBP16.69■□□□□ 0.26
CCDC28B-201ENST00000373602 SORL1Q92673 2214 aa16.68■□□□□ 0.26
CCDC28B-201ENST00000373602 TRAV18A0A075B6X5 111 aa16.68■□□□□ 0.26
CCDC28B-201ENST00000373602 MSGN1A6NI15 193 aa16.68■□□□□ 0.26
CCDC28B-201ENST00000373602 FCGR3BO75015 233 aa16.68■□□□□ 0.26
CCDC28B-201ENST00000373602 AADACP22760 399 aa16.68■□□□□ 0.26
CCDC28B-201ENST00000373602 RPL30P62888 115 aaKnown RBP16.68■□□□□ 0.26
CCDC28B-201ENST00000373602 TNXAQ16473 311 aa16.68■□□□□ 0.26
CCDC28B-201ENST00000373602 KCTD9Q7L273 389 aa16.68■□□□□ 0.26
CCDC28B-201ENST00000373602 OVCH2Q7RTZ1 564 aa16.68■□□□□ 0.26
CCDC28B-201ENST00000373602 PRELID3BQ9Y3B1 194 aa16.68■□□□□ 0.26
CCDC28B-201ENST00000373602 TMEM127O75204 238 aa16.67■□□□□ 0.26
CCDC28B-201ENST00000373602 SAA1P0DJI8 122 aaPredicted RBP16.67■□□□□ 0.26
CCDC28B-201ENST00000373602 EIF4EBP1Q13541 118 aaPredicted RBP16.67■□□□□ 0.26
CCDC28B-201ENST00000373602 CDK10Q15131 360 aa16.67■□□□□ 0.26
CCDC28B-201ENST00000373602 BEST4Q8NFU0 473 aa16.67■□□□□ 0.26
CCDC28B-201ENST00000373602 SRSF12Q8WXF0 261 aaKnown RBP16.67■□□□□ 0.26
CCDC28B-201ENST00000373602 PHB2Q99623 299 aa16.67■□□□□ 0.26
CCDC28B-201ENST00000373602 DCUN1D5Q9BTE7 237 aa16.67■□□□□ 0.26
CCDC28B-201ENST00000373602 ZNF430Q9H8G1 570 aaPredicted RBP16.67■□□□□ 0.26
CCDC28B-201ENST00000373602 MRPS7Q9Y2R9 242 aaKnown RBP16.67■□□□□ 0.26
CCDC28B-201ENST00000373602 TNCP24821 2201 aa16.67■□□□□ 0.26
CCDC28B-201ENST00000373602 SPNP16150 400 aa16.66■□□□□ 0.26
CCDC28B-201ENST00000373602 ZP3P21754 424 aa16.66■□□□□ 0.26
CCDC28B-201ENST00000373602 COL7A1Q02388 2944 aa16.66■□□□□ 0.26
CCDC28B-201ENST00000373602 TIMM50Q3ZCQ8 353 aa16.66■□□□□ 0.26
CCDC28B-201ENST00000373602 HOGA1Q86XE5 327 aa16.66■□□□□ 0.26
CCDC28B-201ENST00000373602 ADAD2Q8NCV1 583 aaKnown RBP16.66■□□□□ 0.26
CCDC28B-201ENST00000373602 OR6Q1Q8NGQ2 317 aa16.66■□□□□ 0.26
CCDC28B-201ENST00000373602 OR4C12Q96R67 309 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms