RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 LINC00473A8K010 186 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 TIMM8AO60220 97 aaPredicted RBP10.17□□□□□ -0.78
CLIP3-201ENST00000360535 FCGR3BO75015 233 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 AMBPP02760 352 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 DDTP30046 118 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 ATP5G3P48201 142 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 TMEM14EPQ6UXP3 125 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 MOB1BQ7L9L4 216 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 MRPL41Q8IXM3 137 aaKnown RBP10.17□□□□□ -0.78
CLIP3-201ENST00000360535 LURAP1Q96LR2 239 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 TRIB1Q96RU8 372 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 P2RX4Q99571 388 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 HINT2Q9BX68 163 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 LAMA5O15230 3695 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 CASP6P55212 293 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 CYP2G1PQ6ZSU1 146 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 OR13A1Q8NGR1 328 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 OR1P1Q8NH06 330 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 KLF14Q8TD94 323 aaPredicted RBP10.17□□□□□ -0.78
CLIP3-201ENST00000360535 QTRT1Q9BXR0 403 aaKnown RBP10.17□□□□□ -0.78
CLIP3-201ENST00000360535 NPCDR1Q9BY65 106 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 A0A1W2PPV4 95 aa10.16□□□□□ -0.78
CLIP3-201ENST00000360535 TNFSF15O95150 251 aa10.16□□□□□ -0.78
CLIP3-201ENST00000360535 LEAP2Q969E1 77 aa10.16□□□□□ -0.78
CLIP3-201ENST00000360535 GNG12Q9UBI6 72 aa10.16□□□□□ -0.78
CLIP3-201ENST00000360535 TRBV24-1A0A075B6N3 115 aa10.16□□□□□ -0.78
CLIP3-201ENST00000360535 ZNF320A2RRD8 509 aa10.16□□□□□ -0.78
CLIP3-201ENST00000360535 NDUFB4O95168 129 aa10.16□□□□□ -0.78
CLIP3-201ENST00000360535 PFN1P07737 140 aaKnown RBP10.16□□□□□ -0.78
CLIP3-201ENST00000360535 SNRPCP09234 159 aaKnown RBP10.16□□□□□ -0.78
CLIP3-201ENST00000360535 CD46P15529 392 aa10.16□□□□□ -0.78
CLIP3-201ENST00000360535 IGHV1-2P23083 117 aa10.16□□□□□ -0.78
CLIP3-201ENST00000360535 CDC34P49427 236 aaPredicted RBP10.16□□□□□ -0.78
CLIP3-201ENST00000360535 UBALD2Q8IYN6 164 aa10.16□□□□□ -0.78
CLIP3-201ENST00000360535 DUSP13Q9UII6 198 aa10.16□□□□□ -0.78
CLIP3-201ENST00000360535 CACNA1HO95180 2353 aa10.16□□□□□ -0.78
CLIP3-201ENST00000360535 G0S2P27469 103 aa10.15□□□□□ -0.78
CLIP3-201ENST00000360535 OR2T10Q8NGZ9 312 aa10.15□□□□□ -0.78
CLIP3-201ENST00000360535 SSMEM1Q8WWF3 244 aa10.15□□□□□ -0.78
CLIP3-201ENST00000360535 CTDSP1Q9GZU7 261 aa10.15□□□□□ -0.78
CLIP3-201ENST00000360535 SRD5A3Q9H8P0 318 aa10.15□□□□□ -0.78
CLIP3-201ENST00000360535 HEYLQ9NQ87 328 aaPredicted RBP10.15□□□□□ -0.78
CLIP3-201ENST00000360535 HSPB7Q9UBY9 170 aa10.15□□□□□ -0.78
CLIP3-201ENST00000360535 KLF13Q9Y2Y9 288 aaPredicted RBP10.15□□□□□ -0.78
CLIP3-201ENST00000360535 ACP1P24666 158 aa10.15□□□□□ -0.78
CLIP3-201ENST00000360535 HOXC12P31275 282 aa10.15□□□□□ -0.78
CLIP3-201ENST00000360535 BRWD1-AS2P59051 145 aa10.15□□□□□ -0.78
CLIP3-201ENST00000360535 GNB2P62879 340 aa10.15□□□□□ -0.78
CLIP3-201ENST00000360535 TMEM183AQ8IXX5 376 aa10.15□□□□□ -0.78
CLIP3-201ENST00000360535 Q8IYB0 196 aa10.15□□□□□ -0.78
CLIP3-201ENST00000360535 NEIL1Q96FI4 390 aaPredicted RBP10.15□□□□□ -0.78
CLIP3-201ENST00000360535 IGHV3OR15-7A0A075B7D8 119 aa10.15□□□□□ -0.79
CLIP3-201ENST00000360535 PIGBOS1A0A0B4J2F0 54 aa10.15□□□□□ -0.79
CLIP3-201ENST00000360535 MLNRO43193 412 aa10.15□□□□□ -0.79
CLIP3-201ENST00000360535 THBS3P49746 956 aa10.15□□□□□ -0.79
CLIP3-201ENST00000360535 PRAMEF5Q5TYX0 476 aa10.15□□□□□ -0.79
CLIP3-201ENST00000360535 VHLLQ6RSH7 139 aa10.15□□□□□ -0.79
CLIP3-201ENST00000360535 COQ2Q96H96 371 aa10.15□□□□□ -0.79
CLIP3-201ENST00000360535 MBNL3Q9NUK0 354 aaKnown RBP10.15□□□□□ -0.79
CLIP3-201ENST00000360535 BDP1A6H8Y1 2624 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 LNP1A1A4G5 178 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 MARCH11A6NNE9 402 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 C1QTNF9P0C862 333 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 CD33P20138 364 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 NPPCP23582 126 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 ERVK11-1P61568 191 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 PKIAP61925 76 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 ZNF766Q5HY98 468 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 ABHD12Q8N2K0 398 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 TMEM242Q9NWH2 141 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 TNRC6BQ9UPQ9 1833 aaKnown RBP10.14□□□□□ -0.79
CLIP3-201ENST00000360535 PKDREJQ9NTG1 2253 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 OR9G9P0C7N8 305 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 GZMBP10144 247 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 ZNF146Q15072 292 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 TCF23Q7RTU1 214 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 R3HDM4Q96D70 268 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 GP6Q9HCN6 339 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 ABCA1O95477 2261 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 OOEPA6NGQ2 149 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 SCGB1D1O95968 90 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 HRASP01112 189 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 CCL11P51671 97 aa10.14□□□□□ -0.79
CLIP3-201ENST00000360535 KMT2EQ8IZD2 1858 aa10.13□□□□□ -0.79
CLIP3-201ENST00000360535 M0R1X1 148 aa10.13□□□□□ -0.79
CLIP3-201ENST00000360535 GPR12P47775 334 aa10.13□□□□□ -0.79
CLIP3-201ENST00000360535 NUBP1P53384 320 aa10.13□□□□□ -0.79
CLIP3-201ENST00000360535 SOX8P57073 446 aa10.13□□□□□ -0.79
CLIP3-201ENST00000360535 PDLIM3Q53GG5 364 aaPredicted RBP10.13□□□□□ -0.79
CLIP3-201ENST00000360535 RPL39P5Q59GN2 51 aa10.13□□□□□ -0.79
CLIP3-201ENST00000360535 MIC13Q5XKP0 118 aa10.13□□□□□ -0.79
CLIP3-201ENST00000360535 ZNF114Q8NC26 417 aa10.13□□□□□ -0.79
CLIP3-201ENST00000360535 WIPI2Q9Y4P8 454 aa10.13□□□□□ -0.79
CLIP3-201ENST00000360535 NPIPB11E5RHQ5 1161 aa10.13□□□□□ -0.79
CLIP3-201ENST00000360535 ZNF664Q8N3J9 261 aa10.13□□□□□ -0.79
CLIP3-201ENST00000360535 OR4A16Q8NH70 328 aa10.13□□□□□ -0.79
CLIP3-201ENST00000360535 MGAQ8IWI9 3026 aa10.13□□□□□ -0.79
CLIP3-201ENST00000360535 TRAV3A0A0B4J244 114 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 TDGF1P13385 188 aa10.12□□□□□ -0.79
CLIP3-201ENST00000360535 CD1BP29016 333 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms