RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 BUB1B-PAK6H3BSN5 160 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 SNAPC5O75971 98 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 LYL1P12980 280 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 DVL1P1P54792 670 aaPredicted RBP15.17■□□□□ 0.02
CLN3-204ENST00000357857 DIAPH2-AS1Q14236 149 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 RTL8BQ17RB0 113 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 TGIF2LXQ8IUE1 241 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 OR4P4Q8NGL7 312 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 OR1S1Q8NH92 325 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 OR5AC2Q9NZP5 309 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 K7EPK0 472 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 ST8SIA3O43173 380 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 PITX3O75364 302 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 CRYZL1O95825 349 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 APOA2P02652 100 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 RLN2P04090 185 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 ARG1P05089 322 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 P0C879 139 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 CXCL2P19875 107 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 NKX2-1P43699 371 aaPredicted RBP15.17■□□□□ 0.02
CLN3-204ENST00000357857 TAGLNQ01995 201 aaKnown RBP15.17■□□□□ 0.02
CLN3-204ENST00000357857 KLRD1Q13241 179 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 HCP5Q6MZN7 132 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 Q6ZRM9 215 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 FAM71E2Q8N5Q1 922 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 DCUN1D4Q92564 292 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 NABP2Q9BQ15 211 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 TNFSF18Q9UNG2 199 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 POMT1Q9Y6A1 747 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 CELSR2Q9HCU4 2923 aa15.17■□□□□ 0.02
CLN3-204ENST00000357857 MARCH11A6NNE9 402 aa15.16■□□□□ 0.02
CLN3-204ENST00000357857 L7N2F9 121 aa15.16■□□□□ 0.02
CLN3-204ENST00000357857 DEDDO75618 318 aa15.16■□□□□ 0.02
CLN3-204ENST00000357857 TOX4O94842 621 aa15.16■□□□□ 0.02
CLN3-204ENST00000357857 RRASP10301 218 aa15.16■□□□□ 0.02
CLN3-204ENST00000357857 USF1P22415 310 aaPredicted RBP15.16■□□□□ 0.02
CLN3-204ENST00000357857 DHRS7BQ6IAN0 325 aaPredicted RBP15.16■□□□□ 0.02
CLN3-204ENST00000357857 H2BFWTQ7Z2G1 175 aa15.16■□□□□ 0.02
CLN3-204ENST00000357857 OR5AN1Q8NGI8 311 aa15.16■□□□□ 0.02
CLN3-204ENST00000357857 MBD6Q96DN6 1003 aa15.16■□□□□ 0.02
CLN3-204ENST00000357857 PCGF1Q9BSM1 259 aa15.16■□□□□ 0.02
CLN3-204ENST00000357857 MFFQ9GZY8 342 aa15.16■□□□□ 0.02
CLN3-204ENST00000357857 CENPEQ02224 2701 aa15.16■□□□□ 0.02
CLN3-204ENST00000357857 H0YJW9 148 aa15.15■□□□□ 0.02
CLN3-204ENST00000357857 MMP9P14780 707 aa15.15■□□□□ 0.02
CLN3-204ENST00000357857 NQO2P16083 231 aa15.15■□□□□ 0.02
CLN3-204ENST00000357857 HOXB4P17483 251 aaPredicted RBP15.15■□□□□ 0.02
CLN3-204ENST00000357857 ERVK-16P61578 105 aa15.15■□□□□ 0.02
CLN3-204ENST00000357857 CXorf66Q5JRM2 361 aaPredicted RBP15.15■□□□□ 0.02
CLN3-204ENST00000357857 DMBX1Q8NFW5 382 aa15.15■□□□□ 0.02
CLN3-204ENST00000357857 INSIG2Q9Y5U4 225 aa15.15■□□□□ 0.02
CLN3-204ENST00000357857 ODF3BA8MYP8 253 aa15.14■□□□□ 0.01
CLN3-204ENST00000357857 COA4Q9NYJ1 87 aa15.14■□□□□ 0.01
CLN3-204ENST00000357857 RCL1Q9Y2P8 373 aaKnown RBP15.14■□□□□ 0.01
CLN3-204ENST00000357857 LY6LH3BQJ8 138 aa15.14■□□□□ 0.01
CLN3-204ENST00000357857 H7C2Y5 167 aa15.14■□□□□ 0.01
CLN3-204ENST00000357857 TXNL1O43396 289 aa15.14■□□□□ 0.01
CLN3-204ENST00000357857 GAPDHP04406 335 aaKnown RBP15.14■□□□□ 0.01
CLN3-204ENST00000357857 HTR1DP28221 377 aa15.14■□□□□ 0.01
CLN3-204ENST00000357857 ID3Q02535 119 aa15.14■□□□□ 0.01
CLN3-204ENST00000357857 MIDNQ504T8 468 aa15.14■□□□□ 0.01
CLN3-204ENST00000357857 SSX9Q7RTT3 188 aa15.14■□□□□ 0.01
CLN3-204ENST00000357857 INO80EQ8NBZ0 244 aaPredicted RBP15.14■□□□□ 0.01
CLN3-204ENST00000357857 RPEQ96AT9 228 aa15.14■□□□□ 0.01
CLN3-204ENST00000357857 TBX15Q96SF7 602 aa15.14■□□□□ 0.01
CLN3-204ENST00000357857 POLQO75417 2590 aa15.13■□□□□ 0.01
CLN3-204ENST00000357857 ABCA12Q86UK0 2595 aa15.13■□□□□ 0.01
CLN3-204ENST00000357857 LEUTXA8MZ59 168 aa15.13■□□□□ 0.01
CLN3-204ENST00000357857 RNASEK-C17orf49H0YIS7 233 aa15.13■□□□□ 0.01
CLN3-204ENST00000357857 NXPH3O95157 252 aa15.13■□□□□ 0.01
CLN3-204ENST00000357857 HRASP01112 189 aa15.13■□□□□ 0.01
CLN3-204ENST00000357857 ACOT7LQ6ZUV0 252 aa15.13■□□□□ 0.01
CLN3-204ENST00000357857 PDPNQ86YL7 162 aa15.13■□□□□ 0.01
CLN3-204ENST00000357857 PDZD9Q8IXQ8 264 aa15.13■□□□□ 0.01
CLN3-204ENST00000357857 DPM3Q9P2X0 92 aa15.13■□□□□ 0.01
CLN3-204ENST00000357857 RNF222A6NCQ9 220 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 FAM90A9PA6NNJ1 464 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 E5RGE8 158 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 OR2F2O95006 317 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 IGKV1-16P04430 117 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 C4BPBP20851 252 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 NUP62P37198 522 aaPredicted RBP15.12■□□□□ 0.01
CLN3-204ENST00000357857 RAB13P51153 203 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 AP2S1P53680 142 aaPredicted RBP15.12■□□□□ 0.01
CLN3-204ENST00000357857 POLR2GP62487 172 aaKnown RBP eCLIP15.12■□□□□ 0.01
CLN3-204ENST00000357857 PAX8Q06710 450 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 OR2F1Q13607 317 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 ZNF345Q14585 488 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 Q5PR19 223 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 TPTE2P1Q5T6R2 138 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 TMUB2Q71RG4 321 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 VKORC1L1Q8N0U8 176 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 MAGT1Q9H0U3 335 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.12■□□□□ 0.01
CLN3-204ENST00000357857 NSG2Q9Y328 171 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 WASHC3Q9Y3C0 194 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 A0A096LNT2 108 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 IGHV1-3A0A0C4DH29 117 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 A0A0D9SG52 128 aa15.12■□□□□ 0.01
CLN3-204ENST00000357857 WRBO00258 174 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms