RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 TMEM17Q86X19 198 aa13.34□□□□□ -0.27
CLN3-203ENST00000357806 ZBTB34Q8NCN2 500 aa13.34□□□□□ -0.27
CLN3-203ENST00000357806 OSR1Q8TAX0 266 aaPredicted RBP13.34□□□□□ -0.27
CLN3-203ENST00000357806 TCTEX1D2Q8WW35 142 aa13.34□□□□□ -0.27
CLN3-203ENST00000357806 BORCS5Q969J3 196 aa13.34□□□□□ -0.27
CLN3-203ENST00000357806 R3HDM4Q96D70 268 aa13.34□□□□□ -0.27
CLN3-203ENST00000357806 ZNF2Q9BSG1 426 aaPredicted RBP13.34□□□□□ -0.27
CLN3-203ENST00000357806 SLIRPQ9GZT3 109 aaKnown RBP13.34□□□□□ -0.27
CLN3-203ENST00000357806 CCL28Q9NRJ3 127 aa13.34□□□□□ -0.27
CLN3-203ENST00000357806 TAS2R8Q9NYW2 309 aa13.34□□□□□ -0.27
CLN3-203ENST00000357806 FCGR3BO75015 233 aa13.33□□□□□ -0.28
CLN3-203ENST00000357806 CA2P00918 260 aa13.33□□□□□ -0.28
CLN3-203ENST00000357806 IGLV2-23P01705 113 aa13.33□□□□□ -0.28
CLN3-203ENST00000357806 RPL30P62888 115 aaKnown RBP13.33□□□□□ -0.28
CLN3-203ENST00000357806 NDPQ00604 133 aa13.33□□□□□ -0.28
CLN3-203ENST00000357806 CFHR3Q02985 330 aa13.33□□□□□ -0.28
CLN3-203ENST00000357806 EIF4EBP1Q13541 118 aaPredicted RBP13.33□□□□□ -0.28
CLN3-203ENST00000357806 ACTBL2Q562R1 376 aa13.33□□□□□ -0.28
CLN3-203ENST00000357806 RNASE12Q5GAN4 147 aaKnown RBP13.33□□□□□ -0.28
CLN3-203ENST00000357806 DHRS11Q6UWP2 260 aa13.33□□□□□ -0.28
CLN3-203ENST00000357806 PPP1R27Q86WC6 154 aa13.33□□□□□ -0.28
CLN3-203ENST00000357806 LYSMD2Q8IV50 215 aa13.33□□□□□ -0.28
CLN3-203ENST00000357806 OR6F1Q8NGZ6 308 aa13.33□□□□□ -0.28
CLN3-203ENST00000357806 RBM38Q9H0Z9 239 aaKnown RBP13.33□□□□□ -0.28
CLN3-203ENST00000357806 TPSG1Q9NRR2 321 aa13.33□□□□□ -0.28
CLN3-203ENST00000357806 RSL24D1Q9UHA3 163 aaKnown RBP13.33□□□□□ -0.28
CLN3-203ENST00000357806 VWFP04275 2813 aa13.32□□□□□ -0.28
CLN3-203ENST00000357806 PF4V1P10720 104 aa13.32□□□□□ -0.28
CLN3-203ENST00000357806 CX3CL1P78423 397 aa13.32□□□□□ -0.28
CLN3-203ENST00000357806 MRPS10P82664 201 aaKnown RBP13.32□□□□□ -0.28
CLN3-203ENST00000357806 FOXE3Q13461 319 aa13.32□□□□□ -0.28
CLN3-203ENST00000357806 VMA21Q3ZAQ7 101 aa13.32□□□□□ -0.28
CLN3-203ENST00000357806 OR2B11Q5JQS5 317 aa13.32□□□□□ -0.28
CLN3-203ENST00000357806 CXorf66Q5JRM2 361 aaPredicted RBP13.32□□□□□ -0.28
CLN3-203ENST00000357806 MFSD4AQ8N468 514 aa13.32□□□□□ -0.28
CLN3-203ENST00000357806 OR52I2Q8NH67 350 aa13.32□□□□□ -0.28
CLN3-203ENST00000357806 OR4S2Q8NH73 311 aa13.32□□□□□ -0.28
CLN3-203ENST00000357806 ABHD5Q8WTS1 349 aa13.32□□□□□ -0.28
CLN3-203ENST00000357806 MOB3AQ96BX8 217 aa13.32□□□□□ -0.28
CLN3-203ENST00000357806 DIRAS2Q96HU8 199 aa13.32□□□□□ -0.28
CLN3-203ENST00000357806 CLCC1Q96S66 551 aa13.32□□□□□ -0.28
CLN3-203ENST00000357806 ABHD1Q96SE0 405 aa13.32□□□□□ -0.28
CLN3-203ENST00000357806 DCUN1D5Q9BTE7 237 aa13.32□□□□□ -0.28
CLN3-203ENST00000357806 ZFP57Q9NU63 452 aa13.32□□□□□ -0.28
CLN3-203ENST00000357806 RABL2AQ9UBK7 228 aaPredicted RBP13.32□□□□□ -0.28
CLN3-203ENST00000357806 RABL2BQ9UNT1 228 aa13.32□□□□□ -0.28
CLN3-203ENST00000357806 TRAV41A0A0B4J266 112 aa13.31□□□□□ -0.28
CLN3-203ENST00000357806 ZNF701M0R085 212 aaPredicted RBP13.31□□□□□ -0.28
CLN3-203ENST00000357806 FCN1O00602 326 aa13.31□□□□□ -0.28
CLN3-203ENST00000357806 TNFSF12O43508 249 aa13.31□□□□□ -0.28
CLN3-203ENST00000357806 IGHG4P01861 327 aa13.31□□□□□ -0.28
CLN3-203ENST00000357806 ELANEP08246 267 aa13.31□□□□□ -0.28
CLN3-203ENST00000357806 KIR2DS2P43631 304 aa13.31□□□□□ -0.28
CLN3-203ENST00000357806 CRIP2P52943 208 aaPredicted RBP13.31□□□□□ -0.28
CLN3-203ENST00000357806 TSPAN5P62079 268 aa13.31□□□□□ -0.28
CLN3-203ENST00000357806 RPL23AP62750 156 aaKnown RBP13.31□□□□□ -0.28
CLN3-203ENST00000357806 CATR1Q13166 79 aa13.31□□□□□ -0.28
CLN3-203ENST00000357806 ZNF562Q6V9R5 426 aa13.31□□□□□ -0.28
CLN3-203ENST00000357806 ZNF818PQ6ZRF7 136 aa13.31□□□□□ -0.28
CLN3-203ENST00000357806 MCFD2Q8NI22 146 aa13.31□□□□□ -0.28
CLN3-203ENST00000357806 FCAMRQ8WWV6 532 aa13.31□□□□□ -0.28
CLN3-203ENST00000357806 KLK11Q9UBX7 282 aa13.31□□□□□ -0.28
CLN3-203ENST00000357806 MTFP1Q9UDX5 166 aa13.31□□□□□ -0.28
CLN3-203ENST00000357806 WSB1Q9Y6I7 421 aa13.31□□□□□ -0.28
CLN3-203ENST00000357806 SRRM4A7MD48 611 aaKnown RBP13.3□□□□□ -0.28
CLN3-203ENST00000357806 G3V318 75 aa13.3□□□□□ -0.28
CLN3-203ENST00000357806 GABARAPH6UMI1 98 aa13.3□□□□□ -0.28
CLN3-203ENST00000357806 CRYGBP07316 175 aa13.3□□□□□ -0.28
CLN3-203ENST00000357806 UBE2KP61086 200 aa13.3□□□□□ -0.28
CLN3-203ENST00000357806 IL18Q14116 193 aa13.3□□□□□ -0.28
CLN3-203ENST00000357806 ECSCRQ19T08 205 aa13.3□□□□□ -0.28
CLN3-203ENST00000357806 PYHIN1Q6K0P9 492 aa13.3□□□□□ -0.28
CLN3-203ENST00000357806 TCTEX1D1Q8N7M0 179 aa13.3□□□□□ -0.28
CLN3-203ENST00000357806 RNF152Q8N8N0 203 aa13.3□□□□□ -0.28
CLN3-203ENST00000357806 ARPC1AQ92747 370 aa13.3□□□□□ -0.28
CLN3-203ENST00000357806 GPHA2Q96T91 129 aa13.3□□□□□ -0.28
CLN3-203ENST00000357806 NXF2Q9GZY0 626 aaKnown RBP13.3□□□□□ -0.28
CLN3-203ENST00000357806 FXYD6Q9H0Q3 95 aa13.3□□□□□ -0.28
CLN3-203ENST00000357806 FBXO7Q9Y3I1 522 aa13.3□□□□□ -0.28
CLN3-203ENST00000357806 TNCP24821 2201 aa13.3□□□□□ -0.28
CLN3-203ENST00000357806 NBEAL1Q6ZS30 2694 aa13.3□□□□□ -0.28
CLN3-203ENST00000357806 TBPP20226 339 aa13.29□□□□□ -0.28
CLN3-203ENST00000357806 PSMB8P28062 276 aa13.29□□□□□ -0.28
CLN3-203ENST00000357806 PPIFP30405 207 aaKnown RBP13.29□□□□□ -0.28
CLN3-203ENST00000357806 SLC6A1P30531 599 aa13.29□□□□□ -0.28
CLN3-203ENST00000357806 TMEM267Q0VDI3 215 aaPredicted RBP13.29□□□□□ -0.28
CLN3-203ENST00000357806 VAX1Q5SQQ9 334 aa13.29□□□□□ -0.28
CLN3-203ENST00000357806 TEX45Q8NA69 505 aa13.29□□□□□ -0.28
CLN3-203ENST00000357806 MGAM2Q2M2H8 2515 aa13.29□□□□□ -0.28
CLN3-203ENST00000357806 A0A1W2PN81 502 aa13.29□□□□□ -0.28
CLN3-203ENST00000357806 NUDT19A8MXV4 375 aa13.29□□□□□ -0.28
CLN3-203ENST00000357806 CREBL2O60519 120 aaPredicted RBP13.29□□□□□ -0.28
CLN3-203ENST00000357806 CNIH1O95406 144 aa13.29□□□□□ -0.28
CLN3-203ENST00000357806 PF4P02776 101 aa13.29□□□□□ -0.28
CLN3-203ENST00000357806 RPLP1P05386 114 aaKnown RBP13.29□□□□□ -0.28
CLN3-203ENST00000357806 GNRHRP30968 328 aa13.29□□□□□ -0.28
CLN3-203ENST00000357806 CHRNA7P36544 502 aa13.29□□□□□ -0.28
CLN3-203ENST00000357806 GNB1P62873 340 aa13.29□□□□□ -0.28
CLN3-203ENST00000357806 DGCR2P98153 550 aa13.29□□□□□ -0.28
CLN3-203ENST00000357806 SSBP1Q04837 148 aaKnown RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms