RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 SLC9A3R2Q15599 337 aa3.22□□□□□ -1.89
LIG4-201ENST00000356922 MIDNQ504T8 468 aa3.22□□□□□ -1.89
LIG4-201ENST00000356922 LY6G6FQ5SQ64 297 aa3.22□□□□□ -1.89
LIG4-201ENST00000356922 Q6YL49 198 aa3.22□□□□□ -1.89
LIG4-201ENST00000356922 C9orf139Q6ZV77 190 aa3.22□□□□□ -1.89
LIG4-201ENST00000356922 ZNF645Q8N7E2 425 aa3.22□□□□□ -1.89
LIG4-201ENST00000356922 C8orf31Q8N9H6 132 aa3.22□□□□□ -1.89
LIG4-201ENST00000356922 OR52B4Q8NGK2 314 aa3.22□□□□□ -1.89
LIG4-201ENST00000356922 MALSU1Q96EH3 234 aa3.22□□□□□ -1.89
LIG4-201ENST00000356922 RSRP1Q9BUV0 290 aa3.22□□□□□ -1.89
LIG4-201ENST00000356922 CCDC32Q9BV29 185 aa3.22□□□□□ -1.89
LIG4-201ENST00000356922 WDR12Q9GZL7 423 aaKnown RBP3.22□□□□□ -1.89
LIG4-201ENST00000356922 PRDM13Q9H4Q3 707 aa3.22□□□□□ -1.89
LIG4-201ENST00000356922 SLC2A9Q9NRM0 540 aa3.22□□□□□ -1.89
LIG4-201ENST00000356922 COPZ2Q9P299 210 aa3.22□□□□□ -1.89
LIG4-201ENST00000356922 CDC42EP3Q9UKI2 254 aa3.22□□□□□ -1.89
LIG4-201ENST00000356922 TRAV3A0A0B4J244 114 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 LEUTXA8MZ59 168 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 H0YJW9 148 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 SNRNP70P08621 437 aaKnown RBP3.21□□□□□ -1.9
LIG4-201ENST00000356922 M6PRP20645 277 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 VAMP1P23763 118 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 SSBP1Q04837 148 aaKnown RBP3.21□□□□□ -1.9
LIG4-201ENST00000356922 C11orf87Q6NUJ2 197 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 MZT2BQ6NZ67 158 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 TGIF2LXQ8IUE1 241 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 CCDC28AQ8IWP9 274 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 ARRDC1Q8N5I2 433 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 BVESQ8NE79 360 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 OR5AN1Q8NGI8 311 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 GLYATL2Q8WU03 294 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 SLC2A8Q9NY64 477 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 A0A0G2JRQ6 117 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 FAM240BA0A1B0GVZ2 78 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 MPTX1A8MV57 137 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 IGKV1D-33P01593 117 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 IGKV1-33P01594 117 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 APOA2P02652 100 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 TCRBP04435 133 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 AKR1C4P17516 323 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 CTRB1P17538 263 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 RAB7AP51149 207 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 PIGPP57054 158 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 B2MP61769 119 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 ASAH1Q13510 395 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 C2orf68Q2NKX9 166 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 CTRB2Q6GPI1 263 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 CCDC144NLQ6NUI1 221 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 FAM122CQ6P4D5 195 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 TBC1D26Q86UD7 250 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 SLC38A6Q8IZM9 456 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 TCTEX1D2Q8WW35 142 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 EAF1Q96JC9 268 aaPredicted RBP3.21□□□□□ -1.9
LIG4-201ENST00000356922 SCGB3A2Q96PL1 93 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 TMEM160Q9NX00 188 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 ZNF107Q9UII5 783 aaPredicted RBP3.21□□□□□ -1.9
LIG4-201ENST00000356922 SIGLEC9Q9Y336 463 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 PRELID3BQ9Y3B1 194 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 TET2Q6N021 2002 aaPredicted RBP3.21□□□□□ -1.9
LIG4-201ENST00000356922 ITGB1BP1O14713 200 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 FCGR3BO75015 233 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 NDUFB6O95139 128 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 IGLV2-23P01705 113 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 RPS16P62249 146 aaKnown RBP3.21□□□□□ -1.9
LIG4-201ENST00000356922 ZNF816Q0VGE8 651 aaPredicted RBP3.21□□□□□ -1.9
LIG4-201ENST00000356922 LIN54Q6MZP7 749 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 Q6ZRM9 215 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 DPAGT1Q9H3H5 408 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 NUDT15Q9NV35 164 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 PIPOXQ9P0Z9 390 aa3.21□□□□□ -1.9
LIG4-201ENST00000356922 A0A1B0GW64 132 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 DNAJC9-AS1A6NH13 148 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 ARPC1BO15143 372 aaKnown RBP3.2□□□□□ -1.9
LIG4-201ENST00000356922 MPPED1O15442 326 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 S1PR2O95136 353 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 GAPDHP04406 335 aaKnown RBP3.2□□□□□ -1.9
LIG4-201ENST00000356922 SERPINE2P07093 398 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 CATR1Q13166 79 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 PPP1R1AQ13522 171 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 MEF2DQ14814 521 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 TMEM95Q3KNT9 176 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 ANKRD55Q3KP44 614 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 C4orf46Q504U0 113 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 ACTBL2Q562R1 376 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 MINOS1Q5TGZ0 78 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 LILRB2Q8N423 598 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 Q8N6K4 173 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.2□□□□□ -1.9
LIG4-201ENST00000356922 AKR1E2Q96JD6 320 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 HINT2Q9BX68 163 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 KIAA1456Q9P272 454 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 LINC00527Q9UJ94 153 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 KCNIP3Q9Y2W7 256 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 MINOS1-NBL1R4GNA1 71 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 NOTCH1P46531 2555 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 NOTCH3Q9UM47 2321 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 FAM181BA6NEQ2 426 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 S100A6P06703 90 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 OR5AC1P0C628 307 aa3.2□□□□□ -1.9
LIG4-201ENST00000356922 FAM106CPP0CH98 169 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms