RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 GLIPR1P48060 266 aa10.97□□□□□ -0.65
COL18A1-201ENST00000342220 ERVFRD-1P60508 538 aa10.97□□□□□ -0.65
COL18A1-201ENST00000342220 HERPUD1Q15011 391 aa10.97□□□□□ -0.65
COL18A1-201ENST00000342220 SOHLH1Q5JUK2 328 aa10.97□□□□□ -0.65
COL18A1-201ENST00000342220 MRGPRGQ86SM5 289 aa10.97□□□□□ -0.65
COL18A1-201ENST00000342220 H1FXQ92522 213 aaKnown RBP10.97□□□□□ -0.65
COL18A1-201ENST00000342220 SCRT1Q9BWW7 348 aa10.97□□□□□ -0.65
COL18A1-201ENST00000342220 GAB2Q9UQC2 676 aa10.97□□□□□ -0.65
COL18A1-201ENST00000342220 RCL1Q9Y2P8 373 aaKnown RBP10.97□□□□□ -0.65
COL18A1-201ENST00000342220 TMED3Q9Y3Q3 217 aa10.97□□□□□ -0.65
COL18A1-201ENST00000342220 RFNGQ9Y644 331 aa10.97□□□□□ -0.65
COL18A1-201ENST00000342220 DCHS2Q6V1P9 2916 aa10.96□□□□□ -0.65
COL18A1-201ENST00000342220 BORCS7-ASMTA0A0B4J1R7 106 aa10.96□□□□□ -0.65
COL18A1-201ENST00000342220 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.96□□□□□ -0.65
COL18A1-201ENST00000342220 COL10A1Q03692 680 aa10.96□□□□□ -0.65
COL18A1-201ENST00000342220 DUX4L9Q6RFH8 374 aaPredicted RBP10.96□□□□□ -0.65
COL18A1-201ENST00000342220 SLC35G3Q8N808 338 aa10.96□□□□□ -0.65
COL18A1-201ENST00000342220 PLPPR1Q8TBJ4 325 aa10.96□□□□□ -0.65
COL18A1-201ENST00000342220 ABHD5Q8WTS1 349 aa10.96□□□□□ -0.65
COL18A1-201ENST00000342220 LRP5LA4QPB2 252 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 TMPRSS2O15393 492 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 GYPAP02724 150 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 SEC11BP0C7V7 166 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 PGA5P0DJD9 388 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 EGR1P18146 543 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 P2RY1P47900 373 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 ELOBQ15370 118 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 IZUMO4Q1ZYL8 232 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 KRTAP27-1Q3LI81 207 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 ZNF324BQ6AW86 544 aaPredicted RBP10.96□□□□□ -0.66
COL18A1-201ENST00000342220 ASCL4Q6XD76 172 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 FGFRL1Q8N441 504 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 TP53RKQ96S44 253 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 CCL13Q99616 98 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 GINS3Q9BRX5 216 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 CHD3Q12873 2000 aaKnown RBP10.96□□□□□ -0.66
COL18A1-201ENST00000342220 CBY3A6NI87 242 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 DFFBO76075 338 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 SSTR5P35346 364 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 LGI3Q8N145 548 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 C1orf162Q8NEQ5 155 aaPredicted RBP10.96□□□□□ -0.66
COL18A1-201ENST00000342220 TECTBQ96PL2 329 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 CCL28Q9NRJ3 127 aa10.96□□□□□ -0.66
COL18A1-201ENST00000342220 DVL1O14640 695 aa10.95□□□□□ -0.66
COL18A1-201ENST00000342220 ST8SIA3O43173 380 aa10.95□□□□□ -0.66
COL18A1-201ENST00000342220 TMEM171Q8WVE6 324 aa10.95□□□□□ -0.66
COL18A1-201ENST00000342220 MOB3AQ96BX8 217 aa10.95□□□□□ -0.66
COL18A1-201ENST00000342220 YPEL4Q96NS1 127 aa10.95□□□□□ -0.66
COL18A1-201ENST00000342220 DNAJC4Q9NNZ3 241 aa10.95□□□□□ -0.66
COL18A1-201ENST00000342220 GNG12Q9UBI6 72 aa10.95□□□□□ -0.66
COL18A1-201ENST00000342220 IQCF6A8MYZ5 107 aa10.95□□□□□ -0.66
COL18A1-201ENST00000342220 UBE2KP61086 200 aa10.95□□□□□ -0.66
COL18A1-201ENST00000342220 WDR82Q6UXN9 313 aa10.95□□□□□ -0.66
COL18A1-201ENST00000342220 TMEM182Q6ZP80 229 aaPredicted RBP10.95□□□□□ -0.66
COL18A1-201ENST00000342220 LRTM2Q8N967 370 aa10.95□□□□□ -0.66
COL18A1-201ENST00000342220 Q8NFD4 153 aa10.95□□□□□ -0.66
COL18A1-201ENST00000342220 NINJ1Q92982 152 aa10.95□□□□□ -0.66
COL18A1-201ENST00000342220 SLC35B3Q9H1N7 401 aa10.95□□□□□ -0.66
COL18A1-201ENST00000342220 KCNIP1Q9NZI2 227 aa10.95□□□□□ -0.66
COL18A1-201ENST00000342220 TNFSF4P23510 183 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 MAS1LP35410 378 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 GLRXP35754 106 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 GPR157Q5UAW9 335 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 OR1L1Q8NH94 360 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 CISD1Q9NZ45 108 aaKnown RBP10.94□□□□□ -0.66
COL18A1-201ENST00000342220 TMEM210A6NLX4 147 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 AMBPP02760 352 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 PPP1CCP36873 323 aaKnown RBP10.94□□□□□ -0.66
COL18A1-201ENST00000342220 LINC00205P59089 165 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 PAX5Q02548 391 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 TEX38Q6PEX7 206 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 LPAR2Q9HBW0 351 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 DOCK11Q5JSL3 2073 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 SVEP1Q4LDE5 3571 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 FAM24AA6NFZ4 105 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 TFPI2P48307 235 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 TLE4Q04727 773 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 IL13RA2Q14627 380 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 OR10A7Q8NGE5 316 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 OR52L2PQ8NGH6 319 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 FAM213BQ8TBF2 198 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 VKORC1Q9BQB6 163 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 SAP30LQ9HAJ7 183 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 NGBQ9NPG2 151 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 ARHGAP32A7KAX9 2087 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 DOPEY2Q9Y3R5 2298 aa10.94□□□□□ -0.66
COL18A1-201ENST00000342220 ERVFC1-1P60608 527 aa10.93□□□□□ -0.66
COL18A1-201ENST00000342220 DAZAP2Q15038 168 aaPredicted RBP10.93□□□□□ -0.66
COL18A1-201ENST00000342220 SMIM21Q3B7S5 101 aa10.93□□□□□ -0.66
COL18A1-201ENST00000342220 RAB39BQ96DA2 213 aa10.93□□□□□ -0.66
COL18A1-201ENST00000342220 GAL3ST2Q9H3Q3 398 aa10.93□□□□□ -0.66
COL18A1-201ENST00000342220 VSTM5A8MXK1 200 aa10.93□□□□□ -0.66
COL18A1-201ENST00000342220 PPYP01298 95 aa10.93□□□□□ -0.66
COL18A1-201ENST00000342220 THBDP07204 575 aa10.93□□□□□ -0.66
COL18A1-201ENST00000342220 CD3EP07766 207 aa10.93□□□□□ -0.66
COL18A1-201ENST00000342220 EWSR1Q01844 656 aaKnown RBP eCLIP10.93□□□□□ -0.667e-7■■■■■ 32.5
COL18A1-201ENST00000342220 SSX7Q7RTT5 188 aa10.93□□□□□ -0.66
COL18A1-201ENST00000342220 FAM185AQ8N0U4 392 aa10.93□□□□□ -0.66
COL18A1-201ENST00000342220 GAPTQ8N292 157 aa10.93□□□□□ -0.66
COL18A1-201ENST00000342220 FAM216BQ8N7L0 139 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms