RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 RBFOX2O43251 390 aaKnown RBP eCLIP18.76■□□□□ 0.59
TRIM28-202ENST00000341753 ADMP35318 185 aa18.76■□□□□ 0.59
TRIM28-202ENST00000341753 EDDM3BP56851 147 aa18.76■□□□□ 0.59
TRIM28-202ENST00000341753 NUFIP2Q7Z417 695 aaKnown RBP18.76■□□□□ 0.59
TRIM28-202ENST00000341753 FAM90A26D6RGX4 464 aa18.75■□□□□ 0.59
TRIM28-202ENST00000341753 VENTXO95231 258 aa18.75■□□□□ 0.59
TRIM28-202ENST00000341753 SYNGR4O95473 234 aa18.75■□□□□ 0.59
TRIM28-202ENST00000341753 MT-CO3P00414 261 aa18.75■□□□□ 0.59
TRIM28-202ENST00000341753 SERPINA7P05543 415 aa18.75■□□□□ 0.59
TRIM28-202ENST00000341753 BTF3P20290 206 aaKnown RBP18.75■□□□□ 0.59
TRIM28-202ENST00000341753 WDYHV1Q96HA8 205 aa18.75■□□□□ 0.59
TRIM28-202ENST00000341753 PATZ1Q9HBE1 687 aaKnown RBP18.75■□□□□ 0.59
TRIM28-202ENST00000341753 PXMP4Q9Y6I8 212 aa18.75■□□□□ 0.59
TRIM28-202ENST00000341753 COL27A1Q8IZC6 1860 aaPredicted RBP18.75■□□□□ 0.59
TRIM28-202ENST00000341753 OR5B21A6NL26 309 aa18.75■□□□□ 0.59
TRIM28-202ENST00000341753 OR3A1P47881 315 aa18.75■□□□□ 0.59
TRIM28-202ENST00000341753 PLP2Q04941 152 aa18.75■□□□□ 0.59
TRIM28-202ENST00000341753 CDIPTO14735 213 aa18.74■□□□□ 0.59
TRIM28-202ENST00000341753 THBS3P49746 956 aa18.74■□□□□ 0.59
TRIM28-202ENST00000341753 SPENQ96T58 3664 aaKnown RBP18.74■□□□□ 0.59
TRIM28-202ENST00000341753 J3QT63 122 aa18.74■□□□□ 0.59
TRIM28-202ENST00000341753 BRWD1-AS2P59051 145 aa18.74■□□□□ 0.59
TRIM28-202ENST00000341753 MSMO1Q15800 293 aa18.74■□□□□ 0.59
TRIM28-202ENST00000341753 NRN1LQ496H8 165 aa18.74■□□□□ 0.59
TRIM28-202ENST00000341753 TOMM20LQ6UXN7 152 aa18.74■□□□□ 0.59
TRIM28-202ENST00000341753 CTNNBIP1Q9NSA3 81 aaPredicted RBP18.74■□□□□ 0.59
TRIM28-202ENST00000341753 MPC1Q9Y5U8 109 aa18.74■□□□□ 0.59
TRIM28-202ENST00000341753 KIR2DL5BA0A0G2JN68 375 aa18.73■□□□□ 0.59
TRIM28-202ENST00000341753 KIR2DL5BA0A0G2JPC4 375 aa18.73■□□□□ 0.59
TRIM28-202ENST00000341753 NEURL1O76050 574 aa18.73■□□□□ 0.59
TRIM28-202ENST00000341753 IGHEP01854 428 aa18.73■□□□□ 0.59
TRIM28-202ENST00000341753 LCN2P80188 198 aa18.73■□□□□ 0.59
TRIM28-202ENST00000341753 TMEM144Q7Z5S9 345 aa18.73■□□□□ 0.59
TRIM28-202ENST00000341753 KIR2DL5AQ8N109 375 aa18.73■□□□□ 0.59
TRIM28-202ENST00000341753 SCCPDHQ8NBX0 429 aa18.73■□□□□ 0.59
TRIM28-202ENST00000341753 TRBV20OR9-2A0A075B6H5 130 aa18.73■□□□□ 0.59
TRIM28-202ENST00000341753 NXPH2O95156 264 aa18.73■□□□□ 0.59
TRIM28-202ENST00000341753 RAB4AP20338 218 aa18.73■□□□□ 0.59
TRIM28-202ENST00000341753 CD82P27701 267 aa18.73■□□□□ 0.59
TRIM28-202ENST00000341753 ATP6V1FQ16864 119 aa18.73■□□□□ 0.59
TRIM28-202ENST00000341753 C12orf49Q9H741 205 aa18.73■□□□□ 0.59
TRIM28-202ENST00000341753 OR10J1P30954 320 aa18.73■□□□□ 0.59
TRIM28-202ENST00000341753 MOB1BQ7L9L4 216 aa18.73■□□□□ 0.59
TRIM28-202ENST00000341753 ZFHX4Q86UP3 3567 aa18.72■□□□□ 0.59
TRIM28-202ENST00000341753 TMEM210A6NLX4 147 aa18.72■□□□□ 0.59
TRIM28-202ENST00000341753 RNF212BA8MTL3 300 aa18.72■□□□□ 0.59
TRIM28-202ENST00000341753 HPRT1P00492 218 aa18.72■□□□□ 0.59
TRIM28-202ENST00000341753 MAGEA5P43359 124 aa18.72■□□□□ 0.59
TRIM28-202ENST00000341753 ZNF645Q8N7E2 425 aa18.72■□□□□ 0.59
TRIM28-202ENST00000341753 ELOVL5Q9NYP7 299 aa18.72■□□□□ 0.59
TRIM28-202ENST00000341753 CBLN1P23435 193 aa18.72■□□□□ 0.59
TRIM28-202ENST00000341753 CMTM2Q8TAZ6 248 aa18.72■□□□□ 0.59
TRIM28-202ENST00000341753 APH1AQ96BI3 265 aa18.72■□□□□ 0.59
TRIM28-202ENST00000341753 LINC00470Q9BZP3 86 aa18.72■□□□□ 0.59
TRIM28-202ENST00000341753 IGKV3D-15A0A087WSY6 115 aa18.71■□□□□ 0.59
TRIM28-202ENST00000341753 PSPNO60542 156 aa18.71■□□□□ 0.59
TRIM28-202ENST00000341753 GRPP07492 148 aa18.71■□□□□ 0.59
TRIM28-202ENST00000341753 BATFQ16520 125 aa18.71■□□□□ 0.59
TRIM28-202ENST00000341753 ALKBH6Q3KRA9 238 aa18.71■□□□□ 0.59
TRIM28-202ENST00000341753 OR2M7Q8NG81 312 aa18.71■□□□□ 0.59
TRIM28-202ENST00000341753 SFRP2Q96HF1 295 aa18.71■□□□□ 0.59
TRIM28-202ENST00000341753 PKIBQ9C010 78 aa18.71■□□□□ 0.59
TRIM28-202ENST00000341753 ZDHHC11Q9H8X9 412 aa18.71■□□□□ 0.59
TRIM28-202ENST00000341753 IGHV3-43A0A0B4J1X8 118 aa18.71■□□□□ 0.59
TRIM28-202ENST00000341753 P0C879 139 aa18.71■□□□□ 0.59
TRIM28-202ENST00000341753 IGHV3-43DP0DP04 118 aa18.71■□□□□ 0.59
TRIM28-202ENST00000341753 RAC2P15153 192 aa18.71■□□□□ 0.59
TRIM28-202ENST00000341753 LHX2P50458 406 aa18.71■□□□□ 0.59
TRIM28-202ENST00000341753 Q6ZWC4 215 aa18.71■□□□□ 0.59
TRIM28-202ENST00000341753 CXorf67Q86X51 503 aaPredicted RBP18.71■□□□□ 0.59
TRIM28-202ENST00000341753 ZCCHC14Q8WYQ9 949 aaKnown RBP18.71■□□□□ 0.59
TRIM28-202ENST00000341753 F6UZH7 168 aa18.7■□□□□ 0.58
TRIM28-202ENST00000341753 H2BFWTQ7Z2G1 175 aa18.7■□□□□ 0.58
TRIM28-202ENST00000341753 Q8N7P7 452 aa18.7■□□□□ 0.58
TRIM28-202ENST00000341753 PARD6AQ9NPB6 346 aa18.7■□□□□ 0.58
TRIM28-202ENST00000341753 TP53TG3Q9ULZ0 132 aa18.7■□□□□ 0.58
TRIM28-202ENST00000341753 A0A1B0GWJ7 208 aa18.7■□□□□ 0.58
TRIM28-202ENST00000341753 DEFB108AA8MXU0 73 aa18.7■□□□□ 0.58
TRIM28-202ENST00000341753 C12orf77C9JDV5 145 aa18.7■□□□□ 0.58
TRIM28-202ENST00000341753 ARR3P36575 388 aa18.7■□□□□ 0.58
TRIM28-202ENST00000341753 SOX8P57073 446 aa18.7■□□□□ 0.58
TRIM28-202ENST00000341753 TPRX1Q8N7U7 411 aa18.7■□□□□ 0.58
TRIM28-202ENST00000341753 MBNL3Q9NUK0 354 aaKnown RBP18.7■□□□□ 0.58
TRIM28-202ENST00000341753 PAM16Q9Y3D7 125 aa18.7■□□□□ 0.58
TRIM28-202ENST00000341753 MDFIC2A0A1B0GVS7 189 aa18.69■□□□□ 0.58
TRIM28-202ENST00000341753 A0A1W2PPV4 95 aa18.69■□□□□ 0.58
TRIM28-202ENST00000341753 IRF2P14316 349 aa18.69■□□□□ 0.58
TRIM28-202ENST00000341753 CDKN1AP38936 164 aa18.69■□□□□ 0.58
TRIM28-202ENST00000341753 CLDN18P56856 261 aa18.69■□□□□ 0.58
TRIM28-202ENST00000341753 AESQ08117 197 aa18.69■□□□□ 0.58
TRIM28-202ENST00000341753 ATP1A1-AS1Q5TC04 95 aa18.69■□□□□ 0.58
TRIM28-202ENST00000341753 PLPPR2Q96GM1 343 aa18.69■□□□□ 0.58
TRIM28-202ENST00000341753 SCO2A0A1W2PP80 73 aa18.69■□□□□ 0.58
TRIM28-202ENST00000341753 C17orf112F2Z3M2 114 aa18.69■□□□□ 0.58
TRIM28-202ENST00000341753 FRMD6-AS1P0C7T7 363 aa18.69■□□□□ 0.58
TRIM28-202ENST00000341753 SPRY4Q9C004 299 aa18.69■□□□□ 0.58
TRIM28-202ENST00000341753 ZNF703Q9H7S9 590 aaPredicted RBP18.69■□□□□ 0.58
TRIM28-202ENST00000341753 F2Z2F3 143 aa18.68■□□□□ 0.58
TRIM28-202ENST00000341753 SLC17A3O00476 420 aa18.68■□□□□ 0.58
TRIM28-202ENST00000341753 PDE6DO43924 150 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms