RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PGLYRP1O75594 196 aaPredicted RBP10.84□□□□□ -0.67
SDC3-201ENST00000336798 CTSBP07858 339 aa10.84□□□□□ -0.67
SDC3-201ENST00000336798 GLIPR1P48060 266 aa10.84□□□□□ -0.67
SDC3-201ENST00000336798 PDLIM4P50479 330 aa10.84□□□□□ -0.67
SDC3-201ENST00000336798 FAM27BQ5VT28 67 aa10.84□□□□□ -0.67
SDC3-201ENST00000336798 TNRC6CQ9HCJ0 1690 aaKnown RBP10.84□□□□□ -0.67
SDC3-201ENST00000336798 PTPRZ1P23471 2315 aaPredicted RBP10.84□□□□□ -0.67
SDC3-201ENST00000336798 ZNF729A6NN14 1252 aaPredicted RBP10.84□□□□□ -0.67
SDC3-201ENST00000336798 PROB1E7EW31 1015 aa10.84□□□□□ -0.67
SDC3-201ENST00000336798 MUC1P15941 1255 aaPredicted RBP10.84□□□□□ -0.67
SDC3-201ENST00000336798 TGIF2-C20orf24A0A0A6YYL0 155 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 IGKV3D-20A0A0C4DH25 116 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 CA11O75493 328 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 CRYBB3P26998 211 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 MRPL18Q9H0U6 180 aaKnown RBP10.83□□□□□ -0.68
SDC3-201ENST00000336798 PARLQ9H300 379 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 ZNF638Q14966 1978 aaKnown RBP10.83□□□□□ -0.68
SDC3-201ENST00000336798 IGHV1-69-2A0A0G2JMI3 117 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 AHRRA9YTQ3 701 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 S1PR2O95136 353 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 TGFAP01135 160 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 FGFRL1Q8N441 504 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 NINQ8N4C6 2090 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 A0A1W2PPC1 479 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 CXCL2P19875 107 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 TNFRSF9Q07011 255 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 MMD2Q8IY49 270 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 GPR146Q96CH1 333 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 SSBP3Q9BWW4 388 aaPredicted RBP10.83□□□□□ -0.68
SDC3-201ENST00000336798 UQCR10Q9UDW1 63 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 TJP1Q07157 1748 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 MPTX1A8MV57 137 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 PLA2G10O15496 165 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 ACSF3Q4G176 576 aaPredicted RBP10.83□□□□□ -0.68
SDC3-201ENST00000336798 GOLT1AQ6ZVE7 132 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 KLF14Q8TD94 323 aaPredicted RBP10.83□□□□□ -0.68
SDC3-201ENST00000336798 CIRBPQ14011 172 aaKnown RBP10.83□□□□□ -0.68
SDC3-201ENST00000336798 LINC00470Q9BZP3 86 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 SH3BGRL3Q9H299 93 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 KNTC1P50748 2209 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 ZNF831Q5JPB2 1677 aa10.83□□□□□ -0.68
SDC3-201ENST00000336798 TRGV3P03979 118 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 PSG9Q00887 426 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 PCOLCEQ15113 449 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 SLC25A45Q8N413 288 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 H0Y980 276 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 RECKO95980 971 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 NPPCP23582 126 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 P2RY6Q15077 328 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 OR4D5Q8NGN0 318 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 NUDT11Q96G61 164 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 DOCK1Q14185 1865 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 ODAMA1E959 279 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 CRYBA2P53672 197 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 SNRPD3P62318 126 aaKnown RBP10.82□□□□□ -0.68
SDC3-201ENST00000336798 FAM159AQ6UWV7 190 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 TMEM136Q6ZRR5 245 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 EEF1AKMT3Q96AZ1 226 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 C18orf15Q96N68 181 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 TOMM7Q9P0U1 55 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 TSPAN7P41732 249 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 H1FOOQ8IZA3 346 aaPredicted RBP10.82□□□□□ -0.68
SDC3-201ENST00000336798 DLL3Q9NYJ7 618 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 SELENOKQ9Y6D0 94 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 ALS2Q96Q42 1657 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 LEPROTL1O95214 131 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 ASAH2BP0C7U1 165 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 COL25A1Q9BXS0 654 aaPredicted RBP10.82□□□□□ -0.68
SDC3-201ENST00000336798 TMEM160Q9NX00 188 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 TNFSF18Q9UNG2 199 aa10.82□□□□□ -0.68
SDC3-201ENST00000336798 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.82□□□□□ -0.68
SDC3-201ENST00000336798 IL4P05112 153 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 SEC11BP0C7V7 166 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 SP9P0CG40 484 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 NPBWR2P48146 333 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 TMEM252Q8N6L7 170 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 TRPM6Q9BX84 2022 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 A6NNC1 897 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 M0R381 172 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 SCN1AP35498 2009 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 FAM201AQ5SY85 155 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 SELENOHQ8IZQ5 122 aaKnown RBP10.81□□□□□ -0.68
SDC3-201ENST00000336798 GALNT14Q96FL9 552 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 MOSPD3O75425 235 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 NMBP08949 121 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 ERASQ7Z444 233 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 ZNRF1Q8ND25 227 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 ZNF418Q8TF45 676 aaPredicted RBP10.81□□□□□ -0.68
SDC3-201ENST00000336798 QTRT1Q9BXR0 403 aaKnown RBP10.81□□□□□ -0.68
SDC3-201ENST00000336798 PGPEP1Q9NXJ5 209 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 C17orf51A8MQB3 221 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 PRB4P10163 310 aaPredicted RBP10.81□□□□□ -0.68
SDC3-201ENST00000336798 P2RY4P51582 365 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 ZNF79Q15937 498 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 A0A0U1RQV5 110 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 GRIFINA4D1Z8 144 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 CEACAM4O75871 244 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 RPL39P5Q59GN2 51 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 BIVMQ86UB2 503 aa10.81□□□□□ -0.68
SDC3-201ENST00000336798 TRBV20OR9-2A0A075B6H5 130 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms