RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 GPR22Q99680 433 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 PITX2Q99697 317 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 ZNF649Q9BS31 505 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 TAPBPLQ9BX59 468 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 OR51B6Q9H340 312 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 PLEKHF2Q9H8W4 249 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 COA4Q9NYJ1 87 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 C21orf62Q9NYP8 219 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 USE1Q9NZ43 259 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 PRELID3BQ9Y3B1 194 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 NRCAMQ92823 1304 aa1.79□□□□□ -2.12
HMGB1-201ENST00000326004 RP1L1Q8IWN7 2480 aaPredicted RBP1.79□□□□□ -2.12
HMGB1-201ENST00000326004 COL6A6A6NMZ7 2263 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 CLUHO75153 1309 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 IGHV3-49A0A0A0MS15 119 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 A0A0G2JMP0 313 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 A0A0X1KG70 313 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 LOC389332A0A1B0GUA5 103 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 EFCAB9A8MZ26 197 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 F5H5K5 113 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 J3QRK9 145 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 UPK2O00526 184 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 KPNA4O00629 521 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-201ENST00000326004 FFAR1O14842 300 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 HPGDSO60760 199 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 UGT2B11O75310 529 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 ENTPD6O75354 484 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 DEXIO95424 95 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 PSMG1O95456 288 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 CYB5R3P00387 301 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-201ENST00000326004 OR4Q2P0C623 313 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 MLNP12872 115 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 IFI30P13284 250 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 NELFEP18615 380 aaKnown RBP1.78□□□□□ -2.12
HMGB1-201ENST00000326004 PSMB9P28065 219 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 GRPRP30550 384 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 CD79BP40259 229 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 CDK9P50750 372 aaKnown RBP1.78□□□□□ -2.12
HMGB1-201ENST00000326004 SLC18A1P54219 525 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 MAGOHP61326 146 aaKnown RBP1.78□□□□□ -2.12
HMGB1-201ENST00000326004 PPP1CAP62136 330 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 HBG1P69891 147 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 HBG2P69892 147 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 PSPHP78330 225 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 ADIGQ0VDE8 80 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 CDK10Q15131 360 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 TBC1D28Q2M2D7 210 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 ZNF404Q494X3 552 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 SLC36A2Q495M3 483 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 Q499Y3 187 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 LAMTOR1Q6IAA8 161 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 FAM183BPQ6ZVS7 135 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 DPPA2Q7Z7J5 298 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 MMGT1Q8N4V1 131 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 APCDD1LQ8NCL9 501 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 OR5T1Q8NG75 326 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 CCL17Q92583 94 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 CPNE4Q96A23 557 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-201ENST00000326004 MAGOHBQ96A72 148 aaKnown RBP1.78□□□□□ -2.12
HMGB1-201ENST00000326004 CMTM5Q96DZ9 223 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 FAAP24Q9BTP7 215 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 KIFC1Q9BW19 673 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 NUDT9Q9BW91 350 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 SUCNR1Q9BXA5 334 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 MRPL20Q9BYC9 149 aaKnown RBP1.78□□□□□ -2.12
HMGB1-201ENST00000326004 MRPS26Q9BYN8 205 aaKnown RBP1.78□□□□□ -2.12
HMGB1-201ENST00000326004 C6orf62Q9GZU0 229 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-201ENST00000326004 ASB7Q9H672 318 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 RHOFQ9HBH0 211 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 CA10Q9NS85 328 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 CMTM6Q9NX76 183 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 COMMD9Q9P000 198 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 RBM12B-AS1Q9P1G2 102 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 RSL24D1Q9UHA3 163 aaKnown RBP1.78□□□□□ -2.12
HMGB1-201ENST00000326004 RPL26L1Q9UNX3 145 aaKnown RBP1.78□□□□□ -2.12
HMGB1-201ENST00000326004 ARL2BPQ9Y2Y0 163 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 KLF13Q9Y2Y9 288 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-201ENST00000326004 SAMHD1Q9Y3Z3 626 aaKnown RBP1.78□□□□□ -2.12
HMGB1-201ENST00000326004 ATRQ13535 2644 aa1.78□□□□□ -2.12
HMGB1-201ENST00000326004 ACACAQ13085 2346 aa1.78□□□□□ -2.13
HMGB1-201ENST00000326004 MYO7AQ13402 2215 aa1.78□□□□□ -2.13
HMGB1-201ENST00000326004 PTPRFP10586 1907 aa1.78□□□□□ -2.13
HMGB1-201ENST00000326004 GREB1Q4ZG55 1949 aa1.78□□□□□ -2.13
HMGB1-201ENST00000326004 DOCK1Q14185 1865 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 NLRC5Q86WI3 1866 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 PATJQ8NI35 1801 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 KIAA1671Q9BY89 1806 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 LOC102724200A0A096LPH7 203 aaPredicted RBP1.77□□□□□ -2.13
HMGB1-201ENST00000326004 IGHV1-3A0A0C4DH29 117 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 FAM92AA1XBS5 289 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 LEUTXA8MZ59 168 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 FAM25AB3EWG3 89 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 FAM25CB3EWG5 89 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 FAM25GB3EWG6 89 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 H3BP45 60 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 I3L4J1 428 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 LGALS9O00182 355 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 PDCD6O75340 191 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 POP7O75817 140 aaKnown RBP1.77□□□□□ -2.13
HMGB1-201ENST00000326004 GATBO75879 557 aaKnown RBP1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms