RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TRBV5-3A0A0A0MS03 114 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 ISG15P05161 165 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 SELENOHQ8IZQ5 122 aaKnown RBP11.98□□□□□ -0.49
CSPG4-201ENST00000308508 OR52M1Q8NGK5 317 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 TMEM262E9PQX1 116 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 GHRHP01286 108 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 CXorf66Q5JRM2 361 aaPredicted RBP11.98□□□□□ -0.49
CSPG4-201ENST00000308508 PLAUP00749 431 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 ASAH2BP0C7U1 165 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 CENPWQ5EE01 88 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 FBXW9Q5XUX1 488 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 FGFRL1Q8N441 504 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 NPFFO15130 113 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 SPINK2P20155 84 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 PSMG3Q9BT73 122 aaPredicted RBP11.98□□□□□ -0.49
CSPG4-201ENST00000308508 RRHO14718 337 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 MGST3O14880 152 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 AGFG2O95081 481 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 GPX1P07203 203 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 ERGP11308 486 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 PRF1P14222 555 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 GPR146Q96CH1 333 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 SNRPCP09234 159 aaKnown RBP11.98□□□□□ -0.49
CSPG4-201ENST00000308508 MFAP4P55083 255 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 SMIM8Q96KF7 97 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 SFXN3Q9BWM7 321 aa11.98□□□□□ -0.49
CSPG4-201ENST00000308508 PGLYRP1O75594 196 aaPredicted RBP11.97□□□□□ -0.49
CSPG4-201ENST00000308508 MAGEA5P43359 124 aa11.97□□□□□ -0.49
CSPG4-201ENST00000308508 LINC00469Q8N7U9 141 aa11.97□□□□□ -0.49
CSPG4-201ENST00000308508 KIAA1551Q9HCM1 1747 aa11.97□□□□□ -0.49
CSPG4-201ENST00000308508 APC2O95996 2303 aa11.97□□□□□ -0.49
CSPG4-201ENST00000308508 TRAV8-2A0A0B4J237 113 aa11.97□□□□□ -0.49
CSPG4-201ENST00000308508 MDP1Q86V88 176 aa11.97□□□□□ -0.49
CSPG4-201ENST00000308508 PRDM14Q9GZV8 571 aa11.97□□□□□ -0.49
CSPG4-201ENST00000308508 SCTP09683 121 aa11.97□□□□□ -0.49
CSPG4-201ENST00000308508 IGFBP6P24592 240 aaPredicted RBP11.97□□□□□ -0.49
CSPG4-201ENST00000308508 PPIAL4EA0A075B759 164 aa11.97□□□□□ -0.49
CSPG4-201ENST00000308508 PPIAL4DF5H284 164 aa11.97□□□□□ -0.49
CSPG4-201ENST00000308508 PPIAL4FP0DN26 164 aa11.97□□□□□ -0.49
CSPG4-201ENST00000308508 PPIAL4AQ9Y536 164 aa11.97□□□□□ -0.49
CSPG4-201ENST00000308508 PTPRZ1P23471 2315 aaPredicted RBP11.97□□□□□ -0.49
CSPG4-201ENST00000308508 A0A1W2PPE3 182 aa11.97□□□□□ -0.49
CSPG4-201ENST00000308508 H2BFSP57053 126 aa11.97□□□□□ -0.49
CSPG4-201ENST00000308508 IGKV3D-11A0A0A0MRZ8 115 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 MARCH11A6NNE9 402 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 IGKV3-11P04433 115 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 TDHQ8IZJ6 230 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 LHX9Q9NQ69 397 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 LIFP15018 202 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 ZP4Q12836 540 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 SAPCD1Q5SSQ6 148 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 LAMTOR1Q6IAA8 161 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 C5orf30Q96GV9 206 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 TMEM101Q96IK0 257 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 NPDC1Q9NQX5 325 aaPredicted RBP11.96□□□□□ -0.49
CSPG4-201ENST00000308508 FAM186AA6NE01 2351 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 H3BRM9 83 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 HCP5Q6MZN7 132 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 DLEC1Q9Y238 1755 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 TRBV5-5A0A0J9YX44 114 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 C2CD4DB7Z1M9 353 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 FAM27BQ5VT28 67 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 RAX2Q96IS3 184 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 SIGMAR1Q99720 223 aa11.96□□□□□ -0.49
CSPG4-201ENST00000308508 DOCK11Q5JSL3 2073 aa11.96□□□□□ -0.5
CSPG4-201ENST00000308508 TRAV9-1A0A075B6T8 112 aa11.96□□□□□ -0.5
CSPG4-201ENST00000308508 SSBP4Q9BWG4 385 aaPredicted RBP11.96□□□□□ -0.5
CSPG4-201ENST00000308508 KLHDC2Q9Y2U9 406 aa11.96□□□□□ -0.5
CSPG4-201ENST00000308508 C2orf68Q2NKX9 166 aa11.96□□□□□ -0.5
CSPG4-201ENST00000308508 DNASE2BQ8WZ79 361 aa11.96□□□□□ -0.5
CSPG4-201ENST00000308508 ZNF488Q96MN9 340 aa11.96□□□□□ -0.5
CSPG4-201ENST00000308508 H7C1H1 209 aa11.96□□□□□ -0.5
CSPG4-201ENST00000308508 CARHSP1Q9Y2V2 147 aaKnown RBP11.96□□□□□ -0.5
CSPG4-201ENST00000308508 ZNF729A6NN14 1252 aaPredicted RBP11.95□□□□□ -0.5
CSPG4-201ENST00000308508 IFITM2Q01629 132 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 C5orf66Q9H5L9 145 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 RBMY1BA6NDE4 496 aaKnown RBP11.95□□□□□ -0.5
CSPG4-201ENST00000308508 RBMY1EA6NEQ0 496 aaKnown RBP11.95□□□□□ -0.5
CSPG4-201ENST00000308508 NTN1O95631 604 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 RBMY1DP0C7P1 496 aaKnown RBP11.95□□□□□ -0.5
CSPG4-201ENST00000308508 RBMY1A1P0DJD3 496 aaKnown RBP11.95□□□□□ -0.5
CSPG4-201ENST00000308508 RBMY1CP0DJD4 496 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 GPX4P36969 197 aaPredicted RBP11.95□□□□□ -0.5
CSPG4-201ENST00000308508 ATP5IP56385 69 aaPredicted RBP11.95□□□□□ -0.5
CSPG4-201ENST00000308508 UNC119Q13432 240 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 ZNF324BQ6AW86 544 aaPredicted RBP11.95□□□□□ -0.5
CSPG4-201ENST00000308508 UCN2Q96RP3 112 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 IL36BQ9NZH7 164 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 A0A087WWC5 75 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 FAM74A4Q5TZK3 123 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 CT55Q8WUE5 264 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 WDYHV1Q96HA8 205 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 SERGEFQ9UGK8 458 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 FGF5P12034 268 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 OR2H2O95918 312 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 ID4P47928 161 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 RND2P52198 227 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 FSCN3Q9NQT6 498 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 ARFGEF1Q9Y6D6 1849 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 A0A1B0GW15 77 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms