RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 DNM1P46Q6ZS02 220 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 SERGEFQ9UGK8 458 aa12.1□□□□□ -0.47
CCDC88A-201ENST00000263630 C5P01031 1676 aa12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 KCNE1BA0A087WTH5 132 aa12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 SPINK14Q6IE38 97 aa12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 CENPVQ7Z7K6 275 aaPredicted RBP12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 ELF5Q9UKW6 265 aaPredicted RBP12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 ZNF600Q6ZNG1 722 aa12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 CST9LQ9H4G1 147 aa12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 ETHE1O95571 254 aa12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 DEFB123Q8N688 67 aa12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 CTSVO60911 334 aa12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 ATOH7Q8N100 152 aa12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 CCL4L1Q8NHW4 92 aa12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 ORAOV1Q8WV07 137 aa12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 ZNF71Q9NQZ8 489 aaPredicted RBP12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 FAM89BQ8N5H3 189 aa12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 DUX3Q96PT4 197 aa12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 PDCD11Q14690 1871 aaKnown RBP12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 SIGLEC5O15389 551 aa12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 EFNB2P52799 333 aa12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 TMEM42Q69YG0 159 aa12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 TMEFF2Q9UIK5 374 aaPredicted RBP12.09□□□□□ -0.47
CCDC88A-201ENST00000263630 A0A1B0GTH9 108 aa12.08□□□□□ -0.47
CCDC88A-201ENST00000263630 NPIPB4C9JG80 1138 aa12.08□□□□□ -0.47
CCDC88A-201ENST00000263630 ASCL4Q6XD76 172 aa12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 LINC00587B1AMM8 73 aa12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 EGR1P18146 543 aa12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 GAGE2EQ4V326 116 aa12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 PAQR9Q6ZVX9 377 aa12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 PUSL1Q8N0Z8 303 aaKnown RBP12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 HIST1H2BAQ96A08 127 aa12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 TMEM74BQ9NUR3 256 aa12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 GAGE2DQ9UEU5 116 aa12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 TINAGQ9UJW2 476 aa12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 ZNF205O95201 554 aa12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 RNASEH2CQ8TDP1 164 aaKnown RBP12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 CTSSP25774 331 aa12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 LHFPL4Q7Z7J7 247 aa12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 MZB1Q8WU39 189 aa12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 F8WEM9 126 aa12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 OGG1O15527 345 aa12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 CXCL3P19876 107 aa12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 IFI27P40305 119 aaPredicted RBP12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 HOGA1Q86XE5 327 aa12.08□□□□□ -0.48
CCDC88A-201ENST00000263630 TM4SF4P48230 202 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 ZNF146Q15072 292 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 GOLT1AQ6ZVE7 132 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 SEMA5BQ9P283 1151 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 SPTY2D1-AS1A0A0U1RR47 76 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 PGPEP1LA6NFU8 196 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 CEACAM5P06731 702 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 HIST1H4AP62805 103 aaKnown RBP12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 PDFQ9HBH1 243 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 NDUFA3O95167 84 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 GGTLC2Q14390 218 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 RSPO2Q6UXX9 243 aaPredicted RBP12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 AGFG2O95081 481 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 GLIPR1P48060 266 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 LDLRAD1Q5T700 205 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 C1orf185Q5T7R7 199 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 ZNF818PQ6ZRF7 136 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 FAM57AQ8TBR7 257 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 KCNS1Q96KK3 526 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 TAF15Q92804 592 aaKnown RBP eCLIP12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 PRR13Q9NZ81 148 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 PRRT4C9JH25 899 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 ADRA2AP08913 450 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 SAA1P0DJI8 122 aaPredicted RBP12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 CCL21O00585 134 aa12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 GPX4P36969 197 aaPredicted RBP12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 MRM2Q9UI43 246 aaKnown RBP12.07□□□□□ -0.48
CCDC88A-201ENST00000263630 C9JCJ5 164 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 UCNP55089 124 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 GAGE2BQ13066 116 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 GGACTQ9BVM4 153 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 PEX7O00628 323 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 FMC1Q96HJ9 113 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 C18orf15Q96N68 181 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 CACNA1IQ9P0X4 2223 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 DOCK5Q9H7D0 1870 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 A0A1W2PQD3 144 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 EIF3GO75821 320 aaKnown RBP eCLIP12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 SNAI3Q3KNW1 292 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 OR11H7Q8NGC8 314 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 TRIP6Q15654 476 aaKnown RBP12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 RCC1P18754 421 aaPredicted RBP12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 INSL4Q14641 139 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 ALX4Q9H161 411 aaPredicted RBP12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 METTL12A8MUP2 240 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 A8MWV9 139 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 VWC2LB2RUY7 222 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 FXYD3Q14802 87 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 VAX1Q5SQQ9 334 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 HCP5Q6MZN7 132 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 SFXN3Q9BWM7 321 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 MGST3O14880 152 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 DTX1Q86Y01 620 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 CEP250Q9BV73 2442 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 PNLIPP16233 465 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms