RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 DNM1P46Q6ZS02 220 aa9.65□□□□□ -0.86
VPS4A-201ENST00000254950 OR11H4Q8NGC9 324 aa9.65□□□□□ -0.86
VPS4A-201ENST00000254950 ACY3Q96HD9 319 aa9.65□□□□□ -0.86
VPS4A-201ENST00000254950 CXCL2P19875 107 aa9.65□□□□□ -0.86
VPS4A-201ENST00000254950 SPCS3P61009 180 aa9.65□□□□□ -0.86
VPS4A-201ENST00000254950 CLLU1Q5K131 121 aa9.65□□□□□ -0.86
VPS4A-201ENST00000254950 CLEC9AQ6UXN8 241 aa9.65□□□□□ -0.86
VPS4A-201ENST00000254950 GAFA1Q96PS6 74 aa9.65□□□□□ -0.86
VPS4A-201ENST00000254950 TMEM140Q9NV12 185 aa9.65□□□□□ -0.86
VPS4A-201ENST00000254950 PPT1P50897 306 aa9.65□□□□□ -0.87
VPS4A-201ENST00000254950 TMEM252Q8N6L7 170 aa9.65□□□□□ -0.87
VPS4A-201ENST00000254950 OR52M1Q8NGK5 317 aa9.65□□□□□ -0.87
VPS4A-201ENST00000254950 ACTR3CQ9C0K3 210 aaPredicted RBP9.65□□□□□ -0.87
VPS4A-201ENST00000254950 RPUSD1Q9UJJ7 312 aaKnown RBP9.65□□□□□ -0.87
VPS4A-201ENST00000254950 NUDT19A8MXV4 375 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 CD55P08174 381 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 IZUMO4Q1ZYL8 232 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 LCN15Q6UWW0 184 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 OR4C13Q8NGP0 309 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 ANAPC10Q9UM13 185 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 OR51B2Q9Y5P1 312 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 TXNL1O43396 289 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 NPY1RP25929 384 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 FBXL19-AS1Q494R0 122 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 MIDNQ504T8 468 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 CST9LP1Q5W188 147 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 ATP5SQ99766 215 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 FGF23Q9GZV9 251 aaPredicted RBP9.64□□□□□ -0.87
VPS4A-201ENST00000254950 SEBOXQ9HB31 216 aaPredicted RBP9.64□□□□□ -0.87
VPS4A-201ENST00000254950 MBNL3Q9NUK0 354 aaKnown RBP9.64□□□□□ -0.87
VPS4A-201ENST00000254950 C17orf98A8MV24 154 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 KRBOX1C9JBD0 128 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 NUPL2O15504 423 aaKnown RBP9.64□□□□□ -0.87
VPS4A-201ENST00000254950 HLA-GP17693 338 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 OPRK1P41145 380 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 LCN2P80188 198 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 OR10A7Q8NGE5 316 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 FAM216AQ8WUB2 273 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 C19orf12Q9NSK7 152 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 TMEM56-RWDD3S4R434 201 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 FRYLO94915 3013 aa9.64□□□□□ -0.87
VPS4A-201ENST00000254950 CT45A6P0DMU7 189 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 CT45A5P0DMU8 189 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 CT45A7P0DMV0 189 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 CT45A1Q5HYN5 189 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 ETFRF1Q6IPR1 90 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 HEPN1Q6WQI6 88 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 CT45A3Q8NHU0 189 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 HES4Q9HCC6 221 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 MALRD1Q5VYJ5 2156 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 SHISA9B4DS77 424 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 AGAP20933 346 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 MMD2Q8IY49 270 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 MISP3Q96FF7 219 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 ARV1Q9H2C2 271 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 DPM3Q9P2X0 92 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 A6NNC1 897 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 COL8A2P25067 703 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 RPL8P62917 257 aaKnown RBP9.63□□□□□ -0.87
VPS4A-201ENST00000254950 C5orf24Q7Z6I8 188 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 UBAC2Q8NBM4 344 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 RASL11BQ9BPW5 248 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 WSB1Q9Y6I7 421 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 EXPH5Q8NEV8 1989 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 SCO1O75880 301 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 OR13C7P0DN81 318 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 RPL27AP46776 148 aaKnown RBP9.63□□□□□ -0.87
VPS4A-201ENST00000254950 LGALS7P47929 136 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 HSPE1P61604 102 aaKnown RBP9.63□□□□□ -0.87
VPS4A-201ENST00000254950 TNFRSF9Q07011 255 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 FAM122CQ6P4D5 195 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 AQP10Q96PS8 301 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 TMEM133Q9H2Q1 129 aa9.63□□□□□ -0.87
VPS4A-201ENST00000254950 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.62□□□□□ -0.872e-6■■■□□ 15.4
VPS4A-201ENST00000254950 WIPF3A6NGB9 483 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 SLC25A17O43808 307 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 SSX2Q16385 188 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 WDR25Q64LD2 544 aaPredicted RBP9.62□□□□□ -0.87
VPS4A-201ENST00000254950 TLNRD1Q9H1K6 362 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 DCAF16Q9NXF7 216 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 THYN1Q9P016 225 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 SPTBN5Q9NRC6 3674 aaKnown RBP9.62□□□□□ -0.87
VPS4A-201ENST00000254950 NPIPB11E5RHQ5 1161 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 KCNAB3O43448 404 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 ZNF737O75373 536 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 LY6HO94772 140 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 KBTBD11O94819 623 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 OR5G3P0C626 314 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 USF1P22415 310 aaPredicted RBP9.62□□□□□ -0.87
VPS4A-201ENST00000254950 PSMB3P49720 205 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 NHLH2Q02577 135 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 OSR1Q8TAX0 266 aaPredicted RBP9.62□□□□□ -0.87
VPS4A-201ENST00000254950 PCP4L1A6NKN8 68 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 RGS13O14921 159 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 SLC25A6P12236 298 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 SRP14P37108 136 aaKnown RBP9.62□□□□□ -0.87
VPS4A-201ENST00000254950 TAS2R45P59539 299 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 SUPT4H1P63272 117 aaKnown RBP9.62□□□□□ -0.87
VPS4A-201ENST00000254950 TOR2AQ5JU69 321 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 SOHLH1Q5JUK2 328 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms