RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 OPN1MW2P0DN77 364 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 OPN1MW3P0DN78 364 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 MPLP40238 635 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 SPATA31B1PQ5VZV4 182 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 FBXW9Q5XUX1 488 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 SAXO1Q8IYX7 474 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 ZNRF1Q8ND25 227 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 CDH20Q9HBT6 801 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 CLDN34H7C241 214 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 CDX4O14627 284 aaPredicted RBP8.9□□□□□ -0.98
USP28-201ENST00000003302 FGF7P21781 194 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 THBS3P49746 956 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 ATG101Q9BSB4 218 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 DCAF16Q9NXF7 216 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 TRAV1-1A0A0B4J248 108 aa8.9□□□□□ -0.99
USP28-201ENST00000003302 A0A0U1RQK1 487 aa8.9□□□□□ -0.99
USP28-201ENST00000003302 PLP2Q04941 152 aa8.9□□□□□ -0.99
USP28-201ENST00000003302 FFAR4Q5NUL3 377 aa8.9□□□□□ -0.99
USP28-201ENST00000003302 ABHD12Q8N2K0 398 aa8.9□□□□□ -0.99
USP28-201ENST00000003302 NPCDR1Q9BY65 106 aa8.9□□□□□ -0.99
USP28-201ENST00000003302 OBP2BQ9NPH6 170 aa8.9□□□□□ -0.99
USP28-201ENST00000003302 SLC39A9Q9NUM3 307 aa8.9□□□□□ -0.99
USP28-201ENST00000003302 RBMXL2O75526 392 aaKnown RBP8.89□□□□□ -0.99
USP28-201ENST00000003302 CLDN14O95500 239 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 S100A2P29034 98 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 TRA2AQ13595 282 aaKnown RBP eCLIP8.89□□□□□ -0.99
USP28-201ENST00000003302 SSX2Q16385 188 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 CD177Q8N6Q3 437 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 CNEP1R1Q8N9A8 125 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 OR10G4Q8NGN3 311 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 OR10G9Q8NGN4 311 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 OR10G7Q8NGN6 311 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 LRRC30A6NM36 301 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 C15orf62A8K5M9 175 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 DFFBO76075 338 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 ACP1P24666 158 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 TMEM41BQ5BJD5 291 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 IMMP2LQ96T52 175 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 VAX2Q9UIW0 290 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 RNF114Q9Y508 228 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 ARHGAP32A7KAX9 2087 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 TRBV6-6A0A0A6YYG2 114 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 GRIFINA4D1Z8 144 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 B4E171 279 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 AQP7O14520 342 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 TSPAN7P41732 249 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 GNB1P62873 340 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 PEAR1Q5VY43 1037 aaPredicted RBP8.89□□□□□ -0.99
USP28-201ENST00000003302 C1orf87Q8N0U7 546 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 MDS2Q8NDY4 140 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 TECTBQ96PL2 329 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 HSPB7Q9UBY9 170 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 NKX2-8O15522 239 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 FOXH1O75593 365 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 ZNF146Q15072 292 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 MLANAQ16655 118 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 ZNF66Q6ZN08 573 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 IL22RA2Q969J5 263 aa8.89□□□□□ -0.99
USP28-201ENST00000003302 CER1O95813 267 aa8.88□□□□□ -0.99
USP28-201ENST00000003302 LURAP1LQ8IV03 231 aa8.88□□□□□ -0.99
USP28-201ENST00000003302 OR8G5Q8NG78 346 aa8.88□□□□□ -0.99
USP28-201ENST00000003302 SSMEM1Q8WWF3 244 aa8.88□□□□□ -0.99
USP28-201ENST00000003302 OR8G1Q15617 311 aa8.88□□□□□ -0.99
USP28-201ENST00000003302 SRSF7Q16629 238 aaKnown RBP eCLIP8.88□□□□□ -0.99
USP28-201ENST00000003302 WDR82Q6UXN9 313 aa8.88□□□□□ -0.99
USP28-201ENST00000003302 DTD1Q8TEA8 209 aa8.88□□□□□ -0.99
USP28-201ENST00000003302 BTBD17A6NE02 478 aa8.88□□□□□ -0.99
USP28-201ENST00000003302 OR5B21A6NL26 309 aa8.88□□□□□ -0.99
USP28-201ENST00000003302 NDUFB4O95168 129 aa8.88□□□□□ -0.99
USP28-201ENST00000003302 BSXQ3C1V8 233 aa8.88□□□□□ -0.99
USP28-201ENST00000003302 LHFPL4Q7Z7J7 247 aa8.88□□□□□ -0.99
USP28-201ENST00000003302 LSM10Q969L4 123 aaKnown RBP8.88□□□□□ -0.99
USP28-201ENST00000003302 MPC1Q9Y5U8 109 aa8.88□□□□□ -0.99
USP28-201ENST00000003302 CUL9Q8IWT3 2517 aa8.88□□□□□ -0.99
USP28-201ENST00000003302 SPTAN1Q13813 2472 aaKnown RBP8.88□□□□□ -0.99
USP28-201ENST00000003302 MARCH11A6NNE9 402 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 CYC1P08574 325 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 GATA2P23769 480 aaPredicted RBP8.87□□□□□ -0.99
USP28-201ENST00000003302 CD82P27701 267 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 HLA-DRB5Q30154 266 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 IGF2RP11717 2491 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 EREGO14944 169 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 TNFSF15O95150 251 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 CD59P13987 128 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 NUBP1P53384 320 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 NRN1LQ496H8 165 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 HIPK2Q9H2X6 1198 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 UNKLQ9H9P5 680 aaKnown RBP8.87□□□□□ -0.99
USP28-201ENST00000003302 CTXN2P0C2S0 81 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 ARR3P36575 388 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 GALR1P47211 349 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 SLC10A1Q14973 349 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 MRGPRGQ86SM5 289 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 OR10A7Q8NGE5 316 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 WIPI2Q9Y4P8 454 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 TRBV24-1A0A075B6N3 115 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 DUXBA0A1W2PPF3 345 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 XKRY2A2RUG3 117 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 LRP5LA4QPB2 252 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 ZNF705GA8MUZ8 300 aaPredicted RBP8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms