RNA–Protein interactions for RNA: ENST00000641939.1

PHGDH-231, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 540 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-231	ENST00000641939	SLC35D1	Q9NTN3	355 aa		11.78	□□□□□ -0.52
PHGDH-231	ENST00000641939	WSB1	Q9Y6I7	421 aa		11.78	□□□□□ -0.52
PHGDH-231	ENST00000641939		G3V318	75 aa		11.77	□□□□□ -0.53
PHGDH-231	ENST00000641939	SPDEF	O95238	335 aa		11.77	□□□□□ -0.53
PHGDH-231	ENST00000641939	PSMB8	P28062	276 aa		11.77	□□□□□ -0.53
PHGDH-231	ENST00000641939	PPIF	P30405	207 aa	Known RBP	11.77	□□□□□ -0.53
PHGDH-231	ENST00000641939	THBS3	P49746	956 aa		11.77	□□□□□ -0.53
PHGDH-231	ENST00000641939	CX3CL1	P78423	397 aa		11.77	□□□□□ -0.53
PHGDH-231	ENST00000641939	TAGLN	Q01995	201 aa	Known RBP	11.77	□□□□□ -0.53
PHGDH-231	ENST00000641939	PSG5	Q15238	335 aa		11.77	□□□□□ -0.53
PHGDH-231	ENST00000641939	ZNF660	Q6AZW8	331 aa	Predicted RBP	11.77	□□□□□ -0.53
PHGDH-231	ENST00000641939	CNIH2	Q6PI25	160 aa		11.77	□□□□□ -0.53
PHGDH-231	ENST00000641939	ETV3L	Q6ZN32	361 aa		11.77	□□□□□ -0.53
PHGDH-231	ENST00000641939	FLYWCH2	Q96CP2	140 aa	Known RBP	11.77	□□□□□ -0.53
PHGDH-231	ENST00000641939	C5orf30	Q96GV9	206 aa		11.77	□□□□□ -0.53
PHGDH-231	ENST00000641939	FUNDC2	Q9BWH2	189 aa		11.77	□□□□□ -0.53
PHGDH-231	ENST00000641939	METTL1	Q9UBP6	276 aa	Known RBP	11.77	□□□□□ -0.53
PHGDH-231	ENST00000641939	ANXA10	Q9UJ72	324 aa		11.77	□□□□□ -0.53
PHGDH-231	ENST00000641939	TRAV41	A0A0B4J266	112 aa		11.76	□□□□□ -0.53
PHGDH-231	ENST00000641939	FCN1	O00602	326 aa		11.76	□□□□□ -0.53
PHGDH-231	ENST00000641939	IGLL1	P15814	213 aa		11.76	□□□□□ -0.53
PHGDH-231	ENST00000641939	NFYA	P23511	347 aa	Predicted RBP	11.76	□□□□□ -0.53
PHGDH-231	ENST00000641939	CDX1	P47902	265 aa	Predicted RBP	11.76	□□□□□ -0.53
PHGDH-231	ENST00000641939	NDP	Q00604	133 aa		11.76	□□□□□ -0.53
PHGDH-231	ENST00000641939	CBX3	Q13185	183 aa		11.76	□□□□□ -0.53
PHGDH-231	ENST00000641939	UBE2NL	Q5JXB2	153 aa		11.76	□□□□□ -0.53
PHGDH-231	ENST00000641939	MRPL41	Q8IXM3	137 aa	Known RBP	11.76	□□□□□ -0.53
PHGDH-231	ENST00000641939	LINC00482	Q8N8I6	264 aa		11.76	□□□□□ -0.53
PHGDH-231	ENST00000641939	OR13F1	Q8NGS4	319 aa		11.76	□□□□□ -0.53
PHGDH-231	ENST00000641939	S100A16	Q96FQ6	103 aa	Known RBP	11.76	□□□□□ -0.53
PHGDH-231	ENST00000641939	RCC1L	Q96I51	464 aa	Known RBP	11.76	□□□□□ -0.53
PHGDH-231	ENST00000641939	ADTRP	Q96IZ2	230 aa		11.76	□□□□□ -0.53
PHGDH-231	ENST00000641939	AUNIP	Q9H7T9	357 aa		11.76	□□□□□ -0.53
PHGDH-231	ENST00000641939	OR2W1	Q9Y3N9	320 aa		11.76	□□□□□ -0.53
PHGDH-231	ENST00000641939	XRCC3	O43542	346 aa		11.75	□□□□□ -0.53
PHGDH-231	ENST00000641939	DUT	P33316	252 aa	Known RBP	11.75	□□□□□ -0.53
PHGDH-231	ENST00000641939	MYCNOS	P40205	109 aa		11.75	□□□□□ -0.53
PHGDH-231	ENST00000641939	LUM	P51884	338 aa	Predicted RBP	11.75	□□□□□ -0.53
PHGDH-231	ENST00000641939	CRIP2	P52943	208 aa	Predicted RBP	11.75	□□□□□ -0.53
PHGDH-231	ENST00000641939	RTL8B	Q17RB0	113 aa		11.75	□□□□□ -0.53
PHGDH-231	ENST00000641939	TMEM65	Q6PI78	240 aa		11.75	□□□□□ -0.53
PHGDH-231	ENST00000641939	ZNF645	Q8N7E2	425 aa		11.75	□□□□□ -0.53
PHGDH-231	ENST00000641939	BEST4	Q8NFU0	473 aa		11.75	□□□□□ -0.53
PHGDH-231	ENST00000641939	ABHD5	Q8WTS1	349 aa		11.75	□□□□□ -0.53
PHGDH-231	ENST00000641939	SLC25A46	Q96AG3	418 aa		11.75	□□□□□ -0.53
PHGDH-231	ENST00000641939	CLCC1	Q96S66	551 aa		11.75	□□□□□ -0.53
PHGDH-231	ENST00000641939	FBXO7	Q9Y3I1	522 aa		11.75	□□□□□ -0.53
PHGDH-231	ENST00000641939		J3QRK9	145 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	CCL24	O00175	119 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	SLC25A17	O43808	307 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	SLC22A5	O76082	557 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	DUS4L	O95620	317 aa	Known RBP	11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	CA2	P00918	260 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	IGLV1-40	P01703	118 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	HLA-DQB1	P01920	261 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	SMIM18	P0DKX4	95 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	RRAS	P10301	218 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	LGALS7	P47929	136 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	ARPC4	P59998	168 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	VBP1	P61758	197 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	NCS1	P62166	190 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	TMEM267	Q0VDI3	215 aa	Predicted RBP	11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	ECSCR	Q19T08	205 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	TMEM177	Q53S58	311 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	C19orf54	Q5BKX5	351 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	ZNF562	Q6V9R5	426 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	HOGA1	Q86XE5	327 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	GVQW1	Q8N7I0	195 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	SAMD12	Q8N8I0	201 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	MINDY2	Q8NBR6	621 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	BVES	Q8NE79	360 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	MYOZ3	Q8TDC0	251 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	KCTD12	Q96CX2	325 aa	Known RBP	11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	RAX2	Q96IS3	184 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	HARBI1	Q96MB7	349 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	P2RX4	Q99571	388 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	KLK15	Q9H2R5	256 aa		11.74	□□□□□ -0.53
PHGDH-231	ENST00000641939	LINC00473	A8K010	186 aa		11.73	□□□□□ -0.53
PHGDH-231	ENST00000641939	SHOX	O15266	292 aa		11.73	□□□□□ -0.53
PHGDH-231	ENST00000641939	IGLV2-23	P01705	113 aa		11.73	□□□□□ -0.53
PHGDH-231	ENST00000641939	EGR2	P11161	476 aa	Predicted RBP	11.73	□□□□□ -0.53
PHGDH-231	ENST00000641939	CBX5	P45973	191 aa		11.73	□□□□□ -0.53
PHGDH-231	ENST00000641939	DEFB136	Q30KP8	78 aa		11.73	□□□□□ -0.53
PHGDH-231	ENST00000641939	PPP1R27	Q86WC6	154 aa		11.73	□□□□□ -0.53
PHGDH-231	ENST00000641939	TCTEX1D1	Q8N7M0	179 aa		11.73	□□□□□ -0.53
PHGDH-231	ENST00000641939	C4orf3	Q8WVX3	66 aa		11.73	□□□□□ -0.53
PHGDH-231	ENST00000641939	DDB2	Q92466	427 aa		11.73	□□□□□ -0.53
PHGDH-231	ENST00000641939	DUX3	Q96PT4	197 aa		11.73	□□□□□ -0.53
PHGDH-231	ENST00000641939	TPSG1	Q9NRR2	321 aa		11.73	□□□□□ -0.53
PHGDH-231	ENST00000641939	NECAP2	Q9NVZ3	263 aa		11.73	□□□□□ -0.53
PHGDH-231	ENST00000641939	NUBP2	Q9Y5Y2	271 aa		11.73	□□□□□ -0.53
PHGDH-231	ENST00000641939	A3GALT2	U3KPV4	340 aa		11.73	□□□□□ -0.53
PHGDH-231	ENST00000641939	IGKV1D-13	A0A0B4J2D9	117 aa		11.72	□□□□□ -0.53
PHGDH-231	ENST00000641939		A0A1W2PN81	502 aa		11.72	□□□□□ -0.53
PHGDH-231	ENST00000641939	TUSC2	O75896	110 aa		11.72	□□□□□ -0.53
PHGDH-231	ENST00000641939	PRB2	P02812	416 aa	Predicted RBP	11.72	□□□□□ -0.53
PHGDH-231	ENST00000641939	IGKV1-13	P0DP09	117 aa		11.72	□□□□□ -0.53
PHGDH-231	ENST00000641939	PTHLH	P12272	177 aa		11.72	□□□□□ -0.53
PHGDH-231	ENST00000641939	CHRNA7	P36544	502 aa		11.72	□□□□□ -0.53
PHGDH-231	ENST00000641939	RAB9A	P51151	201 aa		11.72	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms