RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 TMEM128Q5BJH2 165 aa7.94□□□□□ -1.14
CLN3-261ENST00000637686 FAM71F2Q6NXP2 309 aa7.94□□□□□ -1.14
CLN3-261ENST00000637686 KCTD9Q7L273 389 aa7.94□□□□□ -1.14
CLN3-261ENST00000637686 SLC25A42Q86VD7 318 aa7.94□□□□□ -1.14
CLN3-261ENST00000637686 TCTEX1D1Q8N7M0 179 aa7.94□□□□□ -1.14
CLN3-261ENST00000637686 CCDC71LQ8N9Z2 235 aa7.94□□□□□ -1.14
CLN3-261ENST00000637686 BVESQ8NE79 360 aa7.94□□□□□ -1.14
CLN3-261ENST00000637686 OR2AK2Q8NG84 335 aa7.94□□□□□ -1.14
CLN3-261ENST00000637686 AGMATQ9BSE5 352 aa7.94□□□□□ -1.14
CLN3-261ENST00000637686 MMP28Q9H239 520 aa7.94□□□□□ -1.14
CLN3-261ENST00000637686 C5orf66Q9H5L9 145 aa7.94□□□□□ -1.14
CLN3-261ENST00000637686 FAM212BQ9NTI7 297 aaPredicted RBP7.94□□□□□ -1.14
CLN3-261ENST00000637686 OR1A1Q9P1Q5 309 aa7.94□□□□□ -1.14
CLN3-261ENST00000637686 C14orf166Q9Y224 244 aaKnown RBP7.94□□□□□ -1.14
CLN3-261ENST00000637686 C7orf66A4D0T2 115 aa7.93□□□□□ -1.14
CLN3-261ENST00000637686 SNRPGP15A8MWD9 76 aa7.93□□□□□ -1.14
CLN3-261ENST00000637686 GPR31O00270 319 aa7.93□□□□□ -1.14
CLN3-261ENST00000637686 SPNP16150 400 aa7.93□□□□□ -1.14
CLN3-261ENST00000637686 MDKP21741 143 aaPredicted RBP7.93□□□□□ -1.14
CLN3-261ENST00000637686 CEACAM3P40198 252 aa7.93□□□□□ -1.14
CLN3-261ENST00000637686 RPL15P61313 204 aaKnown RBP7.93□□□□□ -1.14
CLN3-261ENST00000637686 TPTE2P1Q5T6R2 138 aa7.93□□□□□ -1.14
CLN3-261ENST00000637686 DHRS7BQ6IAN0 325 aaPredicted RBP7.93□□□□□ -1.14
CLN3-261ENST00000637686 SLC25A48Q6ZT89 311 aaKnown RBP7.93□□□□□ -1.14
CLN3-261ENST00000637686 CMTM1Q8IZ96 169 aa7.93□□□□□ -1.14
CLN3-261ENST00000637686 ZNF645Q8N7E2 425 aa7.93□□□□□ -1.14
CLN3-261ENST00000637686 OR52L2PQ8NGH6 319 aa7.93□□□□□ -1.14
CLN3-261ENST00000637686 OR10X1Q8NGY0 326 aa7.93□□□□□ -1.14
CLN3-261ENST00000637686 MARCH1Q8TCQ1 289 aa7.93□□□□□ -1.14
CLN3-261ENST00000637686 GALNT14Q96FL9 552 aa7.93□□□□□ -1.14
CLN3-261ENST00000637686 ABHD14AQ9BUJ0 271 aa7.93□□□□□ -1.14
CLN3-261ENST00000637686 GPN1Q9HCN4 374 aaPredicted RBP7.93□□□□□ -1.14
CLN3-261ENST00000637686 PIPOXQ9P0Z9 390 aa7.93□□□□□ -1.14
CLN3-261ENST00000637686 VSIG4Q9Y279 399 aa7.93□□□□□ -1.14
CLN3-261ENST00000637686 AMMECR1Q9Y4X0 333 aaPredicted RBP7.93□□□□□ -1.14
CLN3-261ENST00000637686 DNHD1Q96M86 4753 aa7.93□□□□□ -1.14
CLN3-261ENST00000637686 TRAV6A0A075B6T7 132 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 A0A0B4J2A0 478 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 IGKV1D-13A0A0B4J2D9 117 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 A6NDX4 124 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 ARPC1BO15143 372 aaKnown RBP7.92□□□□□ -1.14
CLN3-261ENST00000637686 SLC31A2O15432 143 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 CHST1O43916 411 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 NDUFA7O95182 113 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 IGKV1-13P0DP09 117 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 PGAM2P15259 253 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 CD24P25063 80 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 GNRHRP30968 328 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 PPP1CCP36873 323 aaKnown RBP7.92□□□□□ -1.14
CLN3-261ENST00000637686 DYNLT3P51808 116 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 DIAPH2-AS1Q14236 149 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 GLDNQ6ZMI3 551 aaPredicted RBP7.92□□□□□ -1.14
CLN3-261ENST00000637686 ZNF66Q6ZN08 573 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 TMEM219Q86XT9 240 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 C3orf56Q8N813 242 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 OR4F5Q8NH21 305 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 RPEQ96AT9 228 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 RTBDNQ9BSG5 229 aaPredicted RBP7.92□□□□□ -1.14
CLN3-261ENST00000637686 SLC5A7Q9GZV3 580 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 IFI27L2Q9H2X8 130 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 SLC2A9Q9NRM0 540 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 SHPKQ9UHJ6 478 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 TCF19Q9Y242 345 aa7.92□□□□□ -1.14
CLN3-261ENST00000637686 CRYM-AS1A6NIL9 109 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 OOSP1A8MZH6 123 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 RAB29O14966 203 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 RLN1P04808 185 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 OR4E1P0C645 316 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 OR8U9P0C7N5 309 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 TRAPPC2P0DI81 140 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 TRAPPC2BP0DI82 140 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 IL3RAP26951 378 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 ARHGDIBP52566 201 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 ZNF134P52741 427 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 PIGPP57054 158 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 FXYD4P59646 89 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 TAGLNQ01995 201 aaKnown RBP7.91□□□□□ -1.14
CLN3-261ENST00000637686 GNMTQ14749 295 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 TATDN3Q17R31 274 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 ABCA11PQ4W5N1 156 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 CT45A1Q5HYN5 189 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 CCDC144NLQ6NUI1 221 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 LIAT1Q6ZQX7 453 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 Q6ZSV7 163 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 SGPP2Q8IWX5 399 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 OR8U1Q8NH10 309 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 CT45A3Q8NHU0 189 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 LINC01006Q8NI28 216 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 CHAC2Q8WUX2 184 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 SECTM1Q8WVN6 248 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 TOMM40LQ969M1 308 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 ADTRPQ96IZ2 230 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 HSD17B10Q99714 261 aaKnown RBP7.91□□□□□ -1.14
CLN3-261ENST00000637686 BEX1Q9HBH7 125 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 RAB18Q9NP72 206 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 ZNF221Q9UK13 617 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 KCNIP3Q9Y2W7 256 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 RBM7Q9Y580 266 aaKnown RBP7.91□□□□□ -1.14
CLN3-261ENST00000637686 MMP24Q9Y5R2 645 aa7.91□□□□□ -1.14
CLN3-261ENST00000637686 CLPSL1A2RUU4 121 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms