RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ZNF383Q8NA42 475 aa14.47□□□□□ -0.09
CLN3-259ENST00000637551 OR4X2Q8NGF9 303 aa14.47□□□□□ -0.09
CLN3-259ENST00000637551 HSD17B10Q99714 261 aaKnown RBP14.47□□□□□ -0.09
CLN3-259ENST00000637551 CEPT1Q9Y6K0 416 aa14.47□□□□□ -0.09
CLN3-259ENST00000637551 OPN1MWP04001 364 aa14.46□□□□□ -0.09
CLN3-259ENST00000637551 OPN1MW2P0DN77 364 aa14.46□□□□□ -0.09
CLN3-259ENST00000637551 OPN1MW3P0DN78 364 aa14.46□□□□□ -0.09
CLN3-259ENST00000637551 VSIG10L2P0DP72 767 aa14.46□□□□□ -0.09
CLN3-259ENST00000637551 DUTP33316 252 aaKnown RBP14.46□□□□□ -0.09
CLN3-259ENST00000637551 SLC35B1P78383 322 aa14.46□□□□□ -0.09
CLN3-259ENST00000637551 DYRK1AQ13627 763 aa14.46□□□□□ -0.09
CLN3-259ENST00000637551 ZNF66Q6ZN08 573 aa14.46□□□□□ -0.09
CLN3-259ENST00000637551 DDB2Q92466 427 aa14.46□□□□□ -0.09
CLN3-259ENST00000637551 FLYWCH2Q96CP2 140 aaKnown RBP14.46□□□□□ -0.09
CLN3-259ENST00000637551 NXF2Q9GZY0 626 aaKnown RBP14.46□□□□□ -0.09
CLN3-259ENST00000637551 RBM38Q9H0Z9 239 aaKnown RBP14.46□□□□□ -0.09
CLN3-259ENST00000637551 RNF150Q9ULK6 438 aa14.46□□□□□ -0.09
CLN3-259ENST00000637551 FAM25AB3EWG3 89 aa14.45□□□□□ -0.1
CLN3-259ENST00000637551 FAM25CB3EWG5 89 aa14.45□□□□□ -0.1
CLN3-259ENST00000637551 FAM25GB3EWG6 89 aa14.45□□□□□ -0.1
CLN3-259ENST00000637551 H7C2Y5 167 aa14.45□□□□□ -0.1
CLN3-259ENST00000637551 RRHO14718 337 aa14.45□□□□□ -0.1
CLN3-259ENST00000637551 PPYP01298 95 aa14.45□□□□□ -0.1
CLN3-259ENST00000637551 NFYAP23511 347 aaPredicted RBP14.45□□□□□ -0.1
CLN3-259ENST00000637551 CRIP2P52943 208 aaPredicted RBP14.45□□□□□ -0.1
CLN3-259ENST00000637551 F2RL1P55085 397 aa14.45□□□□□ -0.1
CLN3-259ENST00000637551 CD83Q01151 205 aa14.45□□□□□ -0.1
CLN3-259ENST00000637551 TMEM177Q53S58 311 aa14.45□□□□□ -0.1
CLN3-259ENST00000637551 OSR1Q8TAX0 266 aaPredicted RBP14.45□□□□□ -0.1
CLN3-259ENST00000637551 SLIRPQ9GZT3 109 aaKnown RBP14.45□□□□□ -0.1
CLN3-259ENST00000637551 SLC35D1Q9NTN3 355 aa14.45□□□□□ -0.1
CLN3-259ENST00000637551 NDUFA13Q9P0J0 144 aa14.45□□□□□ -0.1
CLN3-259ENST00000637551 MRPS7Q9Y2R9 242 aaKnown RBP14.45□□□□□ -0.1
CLN3-259ENST00000637551 RBMX2Q9Y388 322 aaKnown RBP14.45□□□□□ -0.1
CLN3-259ENST00000637551 PRELID3BQ9Y3B1 194 aa14.45□□□□□ -0.1
CLN3-259ENST00000637551 VWFP04275 2813 aa14.44□□□□□ -0.1
CLN3-259ENST00000637551 FCGR2CP31995 323 aa14.44□□□□□ -0.1
CLN3-259ENST00000637551 KIR2DS2P43631 304 aa14.44□□□□□ -0.1
CLN3-259ENST00000637551 ZNF660Q6AZW8 331 aaPredicted RBP14.44□□□□□ -0.1
CLN3-259ENST00000637551 CENPVQ7Z7K6 275 aaPredicted RBP14.44□□□□□ -0.1
CLN3-259ENST00000637551 STPG2Q8N412 459 aa14.44□□□□□ -0.1
CLN3-259ENST00000637551 TCTEX1D1Q8N7M0 179 aa14.44□□□□□ -0.1
CLN3-259ENST00000637551 OR5AU1Q8NGC0 362 aa14.44□□□□□ -0.1
CLN3-259ENST00000637551 OR5H2Q8NGV7 314 aa14.44□□□□□ -0.1
CLN3-259ENST00000637551 MMP27Q9H306 513 aa14.44□□□□□ -0.1
CLN3-259ENST00000637551 EXTL2Q9UBQ6 330 aa14.44□□□□□ -0.1
CLN3-259ENST00000637551 RSL24D1Q9UHA3 163 aaKnown RBP14.44□□□□□ -0.1
CLN3-259ENST00000637551 PSMB11A5LHX3 300 aa14.43□□□□□ -0.1
CLN3-259ENST00000637551 CTDSPLO15194 276 aa14.43□□□□□ -0.1
CLN3-259ENST00000637551 RGS5O15539 181 aa14.43□□□□□ -0.1
CLN3-259ENST00000637551 RBFOX2O43251 390 aaKnown RBP eCLIP14.43□□□□□ -0.1
CLN3-259ENST00000637551 IGLV2-14P01704 120 aa14.43□□□□□ -0.1
CLN3-259ENST00000637551 IGKV1-16P04430 117 aa14.43□□□□□ -0.1
CLN3-259ENST00000637551 EIF4EBP1Q13541 118 aaPredicted RBP14.43□□□□□ -0.1
CLN3-259ENST00000637551 C9orf152Q5JTZ5 239 aa14.43□□□□□ -0.1
CLN3-259ENST00000637551 VAX1Q5SQQ9 334 aa14.43□□□□□ -0.1
CLN3-259ENST00000637551 LIN54Q6MZP7 749 aa14.43□□□□□ -0.1
CLN3-259ENST00000637551 RNF152Q8N8N0 203 aa14.43□□□□□ -0.1
CLN3-259ENST00000637551 MTFP1Q9UDX5 166 aa14.43□□□□□ -0.1
CLN3-259ENST00000637551 GABARAPH6UMI1 98 aa14.42□□□□□ -0.1
CLN3-259ENST00000637551 CREBL2O60519 120 aaPredicted RBP14.42□□□□□ -0.1
CLN3-259ENST00000637551 PTHLHP12272 177 aa14.42□□□□□ -0.1
CLN3-259ENST00000637551 TMEM95Q3KNT9 176 aa14.42□□□□□ -0.1
CLN3-259ENST00000637551 PYHIN1Q6K0P9 492 aa14.42□□□□□ -0.1
CLN3-259ENST00000637551 GLDNQ6ZMI3 551 aaPredicted RBP14.42□□□□□ -0.1
CLN3-259ENST00000637551 KCTD9Q7L273 389 aa14.42□□□□□ -0.1
CLN3-259ENST00000637551 MOB3AQ96BX8 217 aa14.42□□□□□ -0.1
CLN3-259ENST00000637551 C5orf30Q96GV9 206 aa14.42□□□□□ -0.1
CLN3-259ENST00000637551 AIFM2Q9BRQ8 373 aa14.42□□□□□ -0.1
CLN3-259ENST00000637551 MIXL1Q9H2W2 232 aa14.42□□□□□ -0.1
CLN3-259ENST00000637551 OR51J1Q9H342 316 aa14.42□□□□□ -0.1
CLN3-259ENST00000637551 ZFP57Q9NU63 452 aa14.42□□□□□ -0.1
CLN3-259ENST00000637551 EHFQ9NZC4 300 aa14.42□□□□□ -0.1
CLN3-259ENST00000637551 IGKV1D-13A0A0B4J2D9 117 aa14.41□□□□□ -0.1
CLN3-259ENST00000637551 ELANEP08246 267 aa14.41□□□□□ -0.1
CLN3-259ENST00000637551 FGF2P09038 288 aa14.41□□□□□ -0.1
CLN3-259ENST00000637551 IGKV1-13P0DP09 117 aa14.41□□□□□ -0.1
CLN3-259ENST00000637551 AADACP22760 399 aa14.41□□□□□ -0.1
CLN3-259ENST00000637551 HERV-K104P61576 105 aa14.41□□□□□ -0.1
CLN3-259ENST00000637551 LPCAT3Q6P1A2 487 aa14.41□□□□□ -0.1
CLN3-259ENST00000637551 TEX38Q6PEX7 206 aa14.41□□□□□ -0.1
CLN3-259ENST00000637551 ZNF562Q6V9R5 426 aa14.41□□□□□ -0.1
CLN3-259ENST00000637551 SNX29P2Q8IUI4 249 aa14.41□□□□□ -0.1
CLN3-259ENST00000637551 LAX1Q8IWV1 398 aa14.41□□□□□ -0.1
CLN3-259ENST00000637551 ARRDC1Q8N5I2 433 aa14.41□□□□□ -0.1
CLN3-259ENST00000637551 DRAXINQ8NBI3 349 aaPredicted RBP14.41□□□□□ -0.1
CLN3-259ENST00000637551 OR6F1Q8NGZ6 308 aa14.41□□□□□ -0.1
CLN3-259ENST00000637551 CD300LFQ8TDQ1 290 aa14.41□□□□□ -0.1
CLN3-259ENST00000637551 TSSC4Q9Y5U2 329 aaPredicted RBP14.41□□□□□ -0.1
CLN3-259ENST00000637551 PLXNB1O43157 2135 aa14.41□□□□□ -0.1
CLN3-259ENST00000637551 TNCP24821 2201 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 IGHV7-81A0A0B4J1V7 117 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 CTDSP2O14595 271 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 IGHG4P01861 327 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 CSF1P09603 554 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 HRH1P35367 487 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 RPS16P62249 146 aaKnown RBP14.4□□□□□ -0.1
CLN3-259ENST00000637551 DEFA6Q01524 100 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 CFHR3Q02985 330 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 SRSF4Q08170 494 aaKnown RBP14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms