RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 Q6ZRM9 215 aa16.36■□□□□ 0.21
CLN3-250ENST00000636839 ZNF596Q8TC21 504 aa16.36■□□□□ 0.21
CLN3-250ENST00000636839 DDB2Q92466 427 aa16.36■□□□□ 0.21
CLN3-250ENST00000636839 RANBP3Q9H6Z4 567 aaPredicted RBP16.36■□□□□ 0.21
CLN3-250ENST00000636839 IGHV2-70DA0A0C4DH43 119 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 A0A1W2PRD5 423 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 A0A1W2PRF3 423 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 A0A1W2PRM7 423 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 KRASP01116 189 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 EPHA1P21709 976 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 G6PCP35575 357 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 DEFB113Q30KQ7 82 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 NMSQ5H8A3 153 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 LDLRAD2Q5SZI1 272 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 HCP5Q6MZN7 132 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 ZNF833PQ6ZTB9 187 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 FOXRED2Q8IWF2 684 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 FAM216AQ8WUB2 273 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 GPR146Q96CH1 333 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 MRPL20Q9BYC9 149 aaKnown RBP16.35■□□□□ 0.21
CLN3-250ENST00000636839 NMES1Q9C002 83 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 TMED3Q9Y3Q3 217 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 A8MXK9 166 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 H0YIZ8 118 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 TOR1AO14656 332 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 ENSAO43768 121 aaKnown RBP16.35■□□□□ 0.21
CLN3-250ENST00000636839 NXPH3O95157 252 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 IGLV1-47P01700 117 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 RBP4P02753 201 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 LINC00311Q8N616 119 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 ST6GALNAC6Q969X2 333 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 CLEC7AQ9BXN2 247 aa16.35■□□□□ 0.21
CLN3-250ENST00000636839 FXYD6-FXYD2A0A087WZ82 144 aa16.34■□□□□ 0.21
CLN3-250ENST00000636839 RAB32Q13637 225 aa16.34■□□□□ 0.21
CLN3-250ENST00000636839 VMO1Q7Z5L0 202 aa16.34■□□□□ 0.21
CLN3-250ENST00000636839 C8orf31Q8N9H6 132 aa16.34■□□□□ 0.21
CLN3-250ENST00000636839 ZBTB8BQ8NAP8 495 aaPredicted RBP16.34■□□□□ 0.21
CLN3-250ENST00000636839 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.34■□□□□ 0.21
CLN3-250ENST00000636839 MAPK1IP1LQ8NDC0 245 aa16.34■□□□□ 0.21
CLN3-250ENST00000636839 TNFRSF14Q92956 283 aa16.34■□□□□ 0.21
CLN3-250ENST00000636839 HYLS1Q96M11 299 aa16.34■□□□□ 0.21
CLN3-250ENST00000636839 S1PR3Q99500 378 aa16.34■□□□□ 0.21
CLN3-250ENST00000636839 CELSR1Q9NYQ6 3014 aa16.34■□□□□ 0.21
CLN3-250ENST00000636839 M0R1W7 72 aa16.33■□□□□ 0.21
CLN3-250ENST00000636839 MPC2O95563 127 aa16.33■□□□□ 0.21
CLN3-250ENST00000636839 VDAC1P21796 283 aa16.33■□□□□ 0.21
CLN3-250ENST00000636839 PAX6P26367 422 aa16.33■□□□□ 0.21
CLN3-250ENST00000636839 VKORC1L1Q8N0U8 176 aa16.33■□□□□ 0.21
CLN3-250ENST00000636839 IL22RA2Q969J5 263 aa16.33■□□□□ 0.21
CLN3-250ENST00000636839 RNF126Q9BV68 326 aa16.33■□□□□ 0.21
CLN3-250ENST00000636839 hCG_1809904A0A1W2PP81 198 aa16.33■□□□□ 0.2
CLN3-250ENST00000636839 A0A1W2PPE2 198 aa16.33■□□□□ 0.2
CLN3-250ENST00000636839 A0A1W2PR64 198 aa16.33■□□□□ 0.2
CLN3-250ENST00000636839 A0A1W2PRV1 198 aa16.33■□□□□ 0.2
CLN3-250ENST00000636839 B3GALNT1O75752 331 aa16.33■□□□□ 0.2
CLN3-250ENST00000636839 SCGB1D2O95969 90 aa16.33■□□□□ 0.2
CLN3-250ENST00000636839 PSMB6P28072 239 aa16.33■□□□□ 0.2
CLN3-250ENST00000636839 PCGF1Q9BSM1 259 aa16.33■□□□□ 0.2
CLN3-250ENST00000636839 PRTN3P24158 256 aa16.32■□□□□ 0.2
CLN3-250ENST00000636839 AKR1C2P52895 323 aa16.32■□□□□ 0.2
CLN3-250ENST00000636839 S100A10P60903 97 aa16.32■□□□□ 0.2
CLN3-250ENST00000636839 HLA-DRB5Q30154 266 aa16.32■□□□□ 0.2
CLN3-250ENST00000636839 LGALSLQ3ZCW2 172 aaPredicted RBP16.32■□□□□ 0.2
CLN3-250ENST00000636839 C9orf62Q8N4C0 152 aa16.32■□□□□ 0.2
CLN3-250ENST00000636839 OR4P4Q8NGL7 312 aa16.32■□□□□ 0.2
CLN3-250ENST00000636839 SIRPDQ9H106 197 aa16.32■□□□□ 0.2
CLN3-250ENST00000636839 OR5AC2Q9NZP5 309 aa16.32■□□□□ 0.2
CLN3-250ENST00000636839 COMMD9Q9P000 198 aa16.32■□□□□ 0.2
CLN3-250ENST00000636839 MBD2Q9UBB5 411 aa16.32■□□□□ 0.2
CLN3-250ENST00000636839 FOXH1O75593 365 aa16.31■□□□□ 0.2
CLN3-250ENST00000636839 MBPP02686 304 aaPredicted RBP16.31■□□□□ 0.2
CLN3-250ENST00000636839 IGKV1-16P04430 117 aa16.31■□□□□ 0.2
CLN3-250ENST00000636839 CXorf66Q5JRM2 361 aaPredicted RBP16.31■□□□□ 0.2
CLN3-250ENST00000636839 RNASE11Q8TAA1 199 aaKnown RBP16.31■□□□□ 0.2
CLN3-250ENST00000636839 ASB13Q8WXK3 278 aa16.31■□□□□ 0.2
CLN3-250ENST00000636839 HECTD1Q9ULT8 2610 aa16.31■□□□□ 0.2
CLN3-250ENST00000636839 BUB1B-PAK6H3BSN5 160 aa16.31■□□□□ 0.2
CLN3-250ENST00000636839 ARPC5O15511 151 aa16.31■□□□□ 0.2
CLN3-250ENST00000636839 MMP9P14780 707 aa16.31■□□□□ 0.2
CLN3-250ENST00000636839 PRRX1P54821 245 aa16.31■□□□□ 0.2
CLN3-250ENST00000636839 DSCR9P59020 149 aa16.31■□□□□ 0.2
CLN3-250ENST00000636839 CYCSP99999 105 aaKnown RBP16.31■□□□□ 0.2
CLN3-250ENST00000636839 C11orf87Q6NUJ2 197 aa16.31■□□□□ 0.2
CLN3-250ENST00000636839 SSX9Q7RTT3 188 aa16.31■□□□□ 0.2
CLN3-250ENST00000636839 OR4D5Q8NGN0 318 aa16.31■□□□□ 0.2
CLN3-250ENST00000636839 BEX4Q9NWD9 120 aaPredicted RBP16.31■□□□□ 0.2
CLN3-250ENST00000636839 PRELID3BQ9Y3B1 194 aa16.31■□□□□ 0.2
CLN3-250ENST00000636839 HSPB11Q9Y547 144 aa16.31■□□□□ 0.2
CLN3-250ENST00000636839 A0A096LNT2 108 aa16.3■□□□□ 0.2
CLN3-250ENST00000636839 RNASEK-C17orf49H0YIS7 233 aa16.3■□□□□ 0.2
CLN3-250ENST00000636839 CRYZL1O95825 349 aa16.3■□□□□ 0.2
CLN3-250ENST00000636839 ARG1P05089 322 aa16.3■□□□□ 0.2
CLN3-250ENST00000636839 CXCL2P19875 107 aa16.3■□□□□ 0.2
CLN3-250ENST00000636839 USF1P22415 310 aaPredicted RBP16.3■□□□□ 0.2
CLN3-250ENST00000636839 THBS3P49746 956 aa16.3■□□□□ 0.2
CLN3-250ENST00000636839 TMEM186Q96B77 213 aa16.3■□□□□ 0.2
CLN3-250ENST00000636839 TBX15Q96SF7 602 aa16.3■□□□□ 0.2
CLN3-250ENST00000636839 CACNG5Q9UF02 275 aa16.3■□□□□ 0.2
CLN3-250ENST00000636839 LSM5Q9Y4Y9 91 aaKnown RBP16.3■□□□□ 0.2
CLN3-250ENST00000636839 IGHV3-72A0A0B4J1Y9 119 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms