RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 DOCK11Q5JSL3 2073 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 TMEM265A0A087WTH1 108 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 TRBV7-9A0A0J9YWB2 115 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 FBLL1A6NHQ2 334 aaKnown RBP5.82□□□□□ -1.48
SCN1A-213ENST00000636759 OR11H12B2RN74 326 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 H0YJW9 148 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 EML2O95834 649 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 TNFP01375 233 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 CELA3BP08861 270 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 HIST1H1EP10412 219 aaKnown RBP5.82□□□□□ -1.48
SCN1A-213ENST00000636759 HLA-DOBP13765 273 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 COL9A1P20849 921 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 GATA2P23769 480 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-213ENST00000636759 CMPK1P30085 196 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 GPR183P32249 361 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 UQCRFS1P47985 274 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 RPS18P62269 152 aaKnown RBP5.82□□□□□ -1.48
SCN1A-213ENST00000636759 RPEL1Q2QD12 228 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 YAF2Q8IY57 180 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 LRRC75AQ8NAA5 344 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 OR11H1Q8NG94 326 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 OR11H2Q8NH07 326 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 OR2A5Q96R48 311 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 REPIN1Q9BWE0 567 aaKnown RBP5.82□□□□□ -1.48
SCN1A-213ENST00000636759 DECR2Q9NUI1 292 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 A0A087X0K7 114 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 C9orf118A6NHY6 69 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 TMEM50AO95807 157 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 CRYAAP02489 173 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 VDAC1P21796 283 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 CLDN17P56750 224 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 PSG4Q00888 419 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 PMP22Q01453 160 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 DLX2Q07687 328 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-213ENST00000636759 AESQ08117 197 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 ZNF141Q15928 474 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 TMEM249Q2WGJ8 235 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 RNFT1Q5M7Z0 435 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 BPIFA4PQ86YQ2 179 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 TMEM251Q8N6I4 163 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 SCCPDHQ8NBX0 429 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 TMEM52Q8NDY8 209 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 GATAD1Q8WUU5 269 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 NEUROG1Q92886 237 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 RCHY1Q96PM5 261 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 CITED1Q99966 193 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 HDHD3Q9BSH5 251 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-213ENST00000636759 TM2D1Q9BX74 207 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 GNB1LQ9BYB4 327 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 PBOV1Q9GZY1 135 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 TMEM222Q9H0R3 208 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 FAM60AQ9NP50 221 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 MRPL16Q9NX20 251 aaKnown RBP5.82□□□□□ -1.48
SCN1A-213ENST00000636759 PILRAQ9UKJ1 303 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 COA3Q9Y2R0 106 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-213ENST00000636759 ZNF816-ZNF321PA0A0X1KG74 233 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 PSMB11A5LHX3 300 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 ANKRD30BLA7E2S9 258 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 TMPRSS2O15393 492 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 SPINK4O60575 86 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 SRFP11831 508 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 FABP2P12104 132 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 CTLA4P16410 223 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 PGCP20142 388 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 TIMP3P35625 211 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 ID3Q02535 119 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 GATSQ8NAP1 163 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 OR10G9Q8NGN4 311 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 OR10G7Q8NGN6 311 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 OR51E1Q8TCB6 317 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 TSKUQ8WUA8 353 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 RNF133Q8WVZ7 376 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 APOBEC3DQ96AK3 386 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-213ENST00000636759 ZNF524Q96C55 264 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 FOXQ1Q9C009 403 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 TMEM191AQ9H0A3 160 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 SLC7A10Q9NS82 523 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 GTF3C1Q12789 2109 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 LOC101059948A0A1B0GTJ6 334 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 UBE2L5PA0A1B0GUS4 154 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 A0A1W2PR80 420 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 PGPEP1LA6NFU8 196 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 B3GALT2O43825 422 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 NTSR1P30989 418 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 LTBRP36941 435 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 RPP25LQ8N5L8 163 aaKnown RBP5.81□□□□□ -1.48
SCN1A-213ENST00000636759 CYYR1Q96J86 154 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 NAA38Q9BRA0 125 aaKnown RBP5.81□□□□□ -1.48
SCN1A-213ENST00000636759 TMEM70Q9BUB7 260 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 APOOQ9BUR5 198 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 WDR54Q9H977 334 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 PTRH2Q9Y3E5 179 aaKnown RBP5.81□□□□□ -1.48
SCN1A-213ENST00000636759 PCNX3Q9H6A9 2034 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 MYO7AQ13402 2215 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 ADAMTS9Q9P2N4 1935 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 IGKV1D-42A0A075B6H8 117 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 A0A0G2JLM5 398 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 TNFSF14O43557 240 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 MGST1P10620 155 aaKnown RBP5.81□□□□□ -1.48
SCN1A-213ENST00000636759 COX5AP20674 150 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms