RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 CD7P09564 240 aa11.83□□□□□ -0.52
PDLIM3-213ENST00000629667 RBMY1DP0C7P1 496 aaKnown RBP11.83□□□□□ -0.52
PDLIM3-213ENST00000629667 MAPK3P27361 379 aaPredicted RBP11.83□□□□□ -0.52
PDLIM3-213ENST00000629667 MECP2P51608 486 aaKnown RBP11.83□□□□□ -0.52
PDLIM3-213ENST00000629667 PJVKQ0ZLH3 352 aa11.83□□□□□ -0.52
PDLIM3-213ENST00000629667 CD300EQ496F6 205 aaPredicted RBP11.83□□□□□ -0.52
PDLIM3-213ENST00000629667 DEFB125Q8N687 156 aa11.83□□□□□ -0.52
PDLIM3-213ENST00000629667 ZNF485Q8NCK3 441 aa11.83□□□□□ -0.52
PDLIM3-213ENST00000629667 THRSPQ92748 146 aa11.83□□□□□ -0.52
PDLIM3-213ENST00000629667 PHB2Q99623 299 aa11.83□□□□□ -0.52
PDLIM3-213ENST00000629667 NICN1Q9BSH3 213 aa11.83□□□□□ -0.52
PDLIM3-213ENST00000629667 RIMS4Q9H426 269 aaPredicted RBP11.83□□□□□ -0.52
PDLIM3-213ENST00000629667 SRD5A3Q9H8P0 318 aa11.83□□□□□ -0.52
PDLIM3-213ENST00000629667 SLC35D1Q9NTN3 355 aa11.83□□□□□ -0.52
PDLIM3-213ENST00000629667 FRAS1Q86XX4 4008 aa11.83□□□□□ -0.52
PDLIM3-213ENST00000629667 OR11H12B2RN74 326 aa11.82□□□□□ -0.52
PDLIM3-213ENST00000629667 APELAP0DMC3 54 aa11.82□□□□□ -0.52
PDLIM3-213ENST00000629667 CELP19835 753 aa11.82□□□□□ -0.52
PDLIM3-213ENST00000629667 HLA-DRB3P79483 266 aa11.82□□□□□ -0.52
PDLIM3-213ENST00000629667 KCNG3Q8TAE7 436 aa11.82□□□□□ -0.52
PDLIM3-213ENST00000629667 DYNLRB2Q8TF09 96 aa11.82□□□□□ -0.52
PDLIM3-213ENST00000629667 PTX4Q96A99 478 aa11.82□□□□□ -0.52
PDLIM3-213ENST00000629667 TM2D1Q9BX74 207 aa11.82□□□□□ -0.52
PDLIM3-213ENST00000629667 MGAT4AQ9UM21 535 aa11.82□□□□□ -0.52
PDLIM3-213ENST00000629667 TRBV6-6A0A0A6YYG2 114 aa11.81□□□□□ -0.52
PDLIM3-213ENST00000629667 M0R1X1 148 aa11.81□□□□□ -0.52
PDLIM3-213ENST00000629667 IGLV2-23P01705 113 aa11.81□□□□□ -0.52
PDLIM3-213ENST00000629667 SCTP09683 121 aa11.81□□□□□ -0.52
PDLIM3-213ENST00000629667 GLT8D1Q68CQ7 371 aa11.81□□□□□ -0.52
PDLIM3-213ENST00000629667 HARBI1Q96MB7 349 aa11.81□□□□□ -0.52
PDLIM3-213ENST00000629667 HDHD3Q9BSH5 251 aaPredicted RBP11.81□□□□□ -0.52
PDLIM3-213ENST00000629667 WFDC10AQ9H1F0 79 aa11.81□□□□□ -0.52
PDLIM3-213ENST00000629667 AK3Q9UIJ7 227 aa11.81□□□□□ -0.52
PDLIM3-213ENST00000629667 ZNF785A8K8V0 405 aa11.8□□□□□ -0.52
PDLIM3-213ENST00000629667 CRYGBP07316 175 aa11.8□□□□□ -0.52
PDLIM3-213ENST00000629667 CBX3Q13185 183 aa11.8□□□□□ -0.52
PDLIM3-213ENST00000629667 UNC119Q13432 240 aa11.8□□□□□ -0.52
PDLIM3-213ENST00000629667 GUCA2BQ16661 112 aa11.8□□□□□ -0.52
PDLIM3-213ENST00000629667 KCNK15Q9H427 330 aa11.8□□□□□ -0.52
PDLIM3-213ENST00000629667 MSGN1A6NI15 193 aa11.79□□□□□ -0.52
PDLIM3-213ENST00000629667 BMPR1BO00238 502 aa11.79□□□□□ -0.52
PDLIM3-213ENST00000629667 SHOXO15266 292 aa11.79□□□□□ -0.52
PDLIM3-213ENST00000629667 MPPED1O15442 326 aa11.79□□□□□ -0.52
PDLIM3-213ENST00000629667 RBMXL2O75526 392 aaKnown RBP11.79□□□□□ -0.52
PDLIM3-213ENST00000629667 CD1AP06126 327 aa11.79□□□□□ -0.52
PDLIM3-213ENST00000629667 OR9G9P0C7N8 305 aa11.79□□□□□ -0.52
PDLIM3-213ENST00000629667 ST3GAL4Q11206 333 aa11.79□□□□□ -0.52
PDLIM3-213ENST00000629667 C10orf67Q8IYJ2 551 aa11.79□□□□□ -0.52
PDLIM3-213ENST00000629667 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.79□□□□□ -0.52
PDLIM3-213ENST00000629667 ADAD2Q8NCV1 583 aaKnown RBP11.79□□□□□ -0.52
PDLIM3-213ENST00000629667 GGHQ92820 318 aa11.79□□□□□ -0.52
PDLIM3-213ENST00000629667 ST6GALNAC5Q9BVH7 336 aa11.79□□□□□ -0.52
PDLIM3-213ENST00000629667 Q9N2K0 584 aa11.79□□□□□ -0.52
PDLIM3-213ENST00000629667 SMPD3Q9NY59 655 aaPredicted RBP11.79□□□□□ -0.52
PDLIM3-213ENST00000629667 RDH8Q9NYR8 311 aa11.79□□□□□ -0.52
PDLIM3-213ENST00000629667 A0A0A6YYD4 124 aa11.78□□□□□ -0.52
PDLIM3-213ENST00000629667 EFCAB10A6NFE3 127 aa11.78□□□□□ -0.52
PDLIM3-213ENST00000629667 FAM223BA6NKX1 122 aa11.78□□□□□ -0.52
PDLIM3-213ENST00000629667 MYL12BO14950 172 aa11.78□□□□□ -0.52
PDLIM3-213ENST00000629667 SOCS1O15524 211 aa11.78□□□□□ -0.52
PDLIM3-213ENST00000629667 RHOGP84095 191 aa11.78□□□□□ -0.52
PDLIM3-213ENST00000629667 ATP5G2Q06055 141 aa11.78□□□□□ -0.52
PDLIM3-213ENST00000629667 EXOSC2Q13868 293 aaKnown RBP11.78□□□□□ -0.52
PDLIM3-213ENST00000629667 DEFB114Q30KQ6 69 aa11.78□□□□□ -0.52
PDLIM3-213ENST00000629667 RBM48Q5RL73 367 aaKnown RBP11.78□□□□□ -0.52
PDLIM3-213ENST00000629667 C1orf100Q5SVJ3 147 aa11.78□□□□□ -0.52
PDLIM3-213ENST00000629667 TTC23Q5W5X9 447 aa11.78□□□□□ -0.52
PDLIM3-213ENST00000629667 FAM223AQ8IWN6 122 aa11.78□□□□□ -0.52
PDLIM3-213ENST00000629667 URM1Q9BTM9 101 aaKnown RBP11.78□□□□□ -0.52
PDLIM3-213ENST00000629667 AKIP1Q9NQ31 210 aa11.78□□□□□ -0.52
PDLIM3-213ENST00000629667 C12orf4Q9NQ89 552 aa11.78□□□□□ -0.52
PDLIM3-213ENST00000629667 FAM53CQ9NYF3 392 aa11.78□□□□□ -0.52
PDLIM3-213ENST00000629667 ZNF230Q9UIE0 474 aaPredicted RBP11.78□□□□□ -0.52
PDLIM3-213ENST00000629667 CXorf65A6NEN9 183 aa11.77□□□□□ -0.53
PDLIM3-213ENST00000629667 TMEM14DPA8MWL7 114 aa11.77□□□□□ -0.53
PDLIM3-213ENST00000629667 TUSC2O75896 110 aa11.77□□□□□ -0.53
PDLIM3-213ENST00000629667 SRMP19623 302 aa11.77□□□□□ -0.53
PDLIM3-213ENST00000629667 WNT4P56705 351 aa11.77□□□□□ -0.53
PDLIM3-213ENST00000629667 PMS2P11Q13670 270 aa11.77□□□□□ -0.53
PDLIM3-213ENST00000629667 INSL4Q14641 139 aa11.77□□□□□ -0.53
PDLIM3-213ENST00000629667 TNXAQ16473 311 aa11.77□□□□□ -0.53
PDLIM3-213ENST00000629667 RTL8BQ17RB0 113 aa11.77□□□□□ -0.53
PDLIM3-213ENST00000629667 ACSM3Q53FZ2 586 aa11.77□□□□□ -0.53
PDLIM3-213ENST00000629667 SLC16A13Q7RTY0 426 aa11.77□□□□□ -0.53
PDLIM3-213ENST00000629667 LRRTM1Q86UE6 522 aa11.77□□□□□ -0.53
PDLIM3-213ENST00000629667 PQLC1Q8N2U9 271 aa11.77□□□□□ -0.53
PDLIM3-213ENST00000629667 KCTD12Q96CX2 325 aaKnown RBP11.77□□□□□ -0.53
PDLIM3-213ENST00000629667 LPAR5Q9H1C0 372 aa11.77□□□□□ -0.53
PDLIM3-213ENST00000629667 IGKV1-6A0A0C4DH72 117 aa11.76□□□□□ -0.53
PDLIM3-213ENST00000629667 SRRM4A7MD48 611 aaKnown RBP11.76□□□□□ -0.53
PDLIM3-213ENST00000629667 BPNT1O95861 308 aa11.76□□□□□ -0.53
PDLIM3-213ENST00000629667 PRH1P02810 166 aa11.76□□□□□ -0.53
PDLIM3-213ENST00000629667 FOLR2P14207 255 aa11.76□□□□□ -0.53
PDLIM3-213ENST00000629667 KIR2DS2P43631 304 aa11.76□□□□□ -0.53
PDLIM3-213ENST00000629667 QRFPP83859 136 aa11.76□□□□□ -0.53
PDLIM3-213ENST00000629667 TAGLNQ01995 201 aaKnown RBP11.76□□□□□ -0.53
PDLIM3-213ENST00000629667 TMEM177Q53S58 311 aa11.76□□□□□ -0.53
PDLIM3-213ENST00000629667 SRSF12Q8WXF0 261 aaKnown RBP11.76□□□□□ -0.53
PDLIM3-213ENST00000629667 ACOT12Q8WYK0 555 aa11.76□□□□□ -0.53
PDLIM3-213ENST00000629667 DDB2Q92466 427 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms