RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 OVCH2Q7RTZ1 564 aa14.4□□□□□ -0.1
CLN3-239ENST00000628023 Q8N6K4 173 aa14.4□□□□□ -0.1
CLN3-239ENST00000628023 C5orf56Q8N8D9 126 aa14.4□□□□□ -0.1
CLN3-239ENST00000628023 ZNF383Q8NA42 475 aa14.4□□□□□ -0.1
CLN3-239ENST00000628023 OR8H1Q8NGG4 311 aa14.4□□□□□ -0.1
CLN3-239ENST00000628023 SMIM4Q8WVI0 70 aa14.4□□□□□ -0.1
CLN3-239ENST00000628023 GIMAP1Q8WWP7 306 aa14.4□□□□□ -0.1
CLN3-239ENST00000628023 WFDC12Q8WWY7 111 aa14.4□□□□□ -0.1
CLN3-239ENST00000628023 C5orf30Q96GV9 206 aa14.4□□□□□ -0.1
CLN3-239ENST00000628023 ZNF2Q9BSG1 426 aaPredicted RBP14.4□□□□□ -0.1
CLN3-239ENST00000628023 SLC5A7Q9GZV3 580 aa14.4□□□□□ -0.1
CLN3-239ENST00000628023 MTFP1Q9UDX5 166 aa14.4□□□□□ -0.1
CLN3-239ENST00000628023 SH2D7A6NKC9 451 aaPredicted RBP14.39□□□□□ -0.11
CLN3-239ENST00000628023 PROP1O75360 226 aa14.39□□□□□ -0.11
CLN3-239ENST00000628023 VDAC2P45880 294 aaPredicted RBP14.39□□□□□ -0.11
CLN3-239ENST00000628023 DEFA6Q01524 100 aa14.39□□□□□ -0.11
CLN3-239ENST00000628023 LYSMD2Q8IV50 215 aa14.39□□□□□ -0.11
CLN3-239ENST00000628023 OR5AN1Q8NGI8 311 aa14.39□□□□□ -0.11
CLN3-239ENST00000628023 OR6F1Q8NGZ6 308 aa14.39□□□□□ -0.11
CLN3-239ENST00000628023 ADTRPQ96IZ2 230 aa14.39□□□□□ -0.11
CLN3-239ENST00000628023 RASL11BQ9BPW5 248 aa14.39□□□□□ -0.11
CLN3-239ENST00000628023 SLC35D1Q9NTN3 355 aa14.39□□□□□ -0.11
CLN3-239ENST00000628023 KIAA1456Q9P272 454 aa14.39□□□□□ -0.11
CLN3-239ENST00000628023 RBMX2Q9Y388 322 aaKnown RBP14.39□□□□□ -0.11
CLN3-239ENST00000628023 M0QYG6 137 aa14.38□□□□□ -0.11
CLN3-239ENST00000628023 M0QZ24 198 aa14.38□□□□□ -0.11
CLN3-239ENST00000628023 CTDSPLO15194 276 aa14.38□□□□□ -0.11
CLN3-239ENST00000628023 AMY1AP04745 511 aa14.38□□□□□ -0.11
CLN3-239ENST00000628023 AMY2AP04746 511 aa14.38□□□□□ -0.11
CLN3-239ENST00000628023 IFNA6P05013 189 aa14.38□□□□□ -0.11
CLN3-239ENST00000628023 TBPP20226 339 aa14.38□□□□□ -0.11
CLN3-239ENST00000628023 LINC00205P59089 165 aa14.38□□□□□ -0.11
CLN3-239ENST00000628023 TAS2R19P59542 299 aa14.38□□□□□ -0.11
CLN3-239ENST00000628023 SSBP1Q04837 148 aaKnown RBP14.38□□□□□ -0.11
CLN3-239ENST00000628023 RTL8BQ17RB0 113 aa14.38□□□□□ -0.11
CLN3-239ENST00000628023 RNASE10Q5GAN6 216 aaKnown RBP14.38□□□□□ -0.11
CLN3-239ENST00000628023 C11orf88Q6PI97 169 aa14.38□□□□□ -0.11
CLN3-239ENST00000628023 PDPNQ86YL7 162 aa14.38□□□□□ -0.11
CLN3-239ENST00000628023 TRRAPQ9Y4A5 3859 aa14.38□□□□□ -0.11
CLN3-239ENST00000628023 NBR2O15453 112 aa14.37□□□□□ -0.11
CLN3-239ENST00000628023 F2RL1P55085 397 aa14.37□□□□□ -0.11
CLN3-239ENST00000628023 RPS16P62249 146 aaKnown RBP14.37□□□□□ -0.11
CLN3-239ENST00000628023 TAGLNQ01995 201 aaKnown RBP14.37□□□□□ -0.11
CLN3-239ENST00000628023 PLGLAQ15195 96 aa14.37□□□□□ -0.11
CLN3-239ENST00000628023 TMEM95Q3KNT9 176 aa14.37□□□□□ -0.11
CLN3-239ENST00000628023 PDLIM3Q53GG5 364 aaPredicted RBP14.37□□□□□ -0.11
CLN3-239ENST00000628023 PYDC2Q56P42 97 aa14.37□□□□□ -0.11
CLN3-239ENST00000628023 SPANXN2Q5MJ10 180 aa14.37□□□□□ -0.11
CLN3-239ENST00000628023 Q6ZS46 218 aa14.37□□□□□ -0.11
CLN3-239ENST00000628023 KCTD9Q7L273 389 aa14.37□□□□□ -0.11
CLN3-239ENST00000628023 Q8N2B8 174 aa14.37□□□□□ -0.11
CLN3-239ENST00000628023 Q8N9W7 124 aa14.37□□□□□ -0.11
CLN3-239ENST00000628023 BORCS5Q969J3 196 aa14.37□□□□□ -0.11
CLN3-239ENST00000628023 CCL28Q9NRJ3 127 aa14.37□□□□□ -0.11
CLN3-239ENST00000628023 TAS2R8Q9NYW2 309 aa14.37□□□□□ -0.11
CLN3-239ENST00000628023 TNFSF12O43508 249 aa14.36□□□□□ -0.11
CLN3-239ENST00000628023 CD3DP04234 171 aa14.36□□□□□ -0.11
CLN3-239ENST00000628023 CSF1P09603 554 aa14.36□□□□□ -0.11
CLN3-239ENST00000628023 VSIG10L2P0DP72 767 aa14.36□□□□□ -0.11
CLN3-239ENST00000628023 RRASP10301 218 aa14.36□□□□□ -0.11
CLN3-239ENST00000628023 CNTFRP26992 372 aa14.36□□□□□ -0.11
CLN3-239ENST00000628023 DUTP33316 252 aaKnown RBP14.36□□□□□ -0.11
CLN3-239ENST00000628023 VAX1Q5SQQ9 334 aa14.36□□□□□ -0.11
CLN3-239ENST00000628023 DHRS11Q6UWP2 260 aa14.36□□□□□ -0.11
CLN3-239ENST00000628023 KLHDC1Q8N7A1 406 aa14.36□□□□□ -0.11
CLN3-239ENST00000628023 TMEM229BQ8NBD8 167 aa14.36□□□□□ -0.11
CLN3-239ENST00000628023 BVESQ8NE79 360 aa14.36□□□□□ -0.11
CLN3-239ENST00000628023 TCTEX1D2Q8WW35 142 aa14.36□□□□□ -0.11
CLN3-239ENST00000628023 MOB3AQ96BX8 217 aa14.36□□□□□ -0.11
CLN3-239ENST00000628023 FLYWCH2Q96CP2 140 aaKnown RBP14.36□□□□□ -0.11
CLN3-239ENST00000628023 RITA1Q96K30 269 aa14.36□□□□□ -0.11
CLN3-239ENST00000628023 HSD17B10Q99714 261 aaKnown RBP14.36□□□□□ -0.11
CLN3-239ENST00000628023 CITED1Q99966 193 aa14.36□□□□□ -0.11
CLN3-239ENST00000628023 TINAGL1Q9GZM7 467 aaPredicted RBP14.36□□□□□ -0.11
CLN3-239ENST00000628023 LIN7CQ9NUP9 197 aaKnown RBP14.36□□□□□ -0.11
CLN3-239ENST00000628023 PRELID3BQ9Y3B1 194 aa14.36□□□□□ -0.11
CLN3-239ENST00000628023 IGKV1-16P04430 117 aa14.35□□□□□ -0.11
CLN3-239ENST00000628023 PROK1P58294 105 aa14.35□□□□□ -0.11
CLN3-239ENST00000628023 SRSF4Q08170 494 aaKnown RBP14.35□□□□□ -0.11
CLN3-239ENST00000628023 MSMO1Q15800 293 aa14.35□□□□□ -0.11
CLN3-239ENST00000628023 OR2B11Q5JQS5 317 aa14.35□□□□□ -0.11
CLN3-239ENST00000628023 ZNF660Q6AZW8 331 aaPredicted RBP14.35□□□□□ -0.11
CLN3-239ENST00000628023 ZBTB34Q8NCN2 500 aa14.35□□□□□ -0.11
CLN3-239ENST00000628023 OR6Q1Q8NGQ2 317 aa14.35□□□□□ -0.11
CLN3-239ENST00000628023 TSNAXQ99598 290 aaKnown RBP14.35□□□□□ -0.11
CLN3-239ENST00000628023 FXYD6Q9H0Q3 95 aa14.35□□□□□ -0.11
CLN3-239ENST00000628023 PLSCR3Q9NRY6 295 aa14.35□□□□□ -0.11
CLN3-239ENST00000628023 SERTAD4Q9NUC0 356 aa14.35□□□□□ -0.11
CLN3-239ENST00000628023 ZNF107Q9UII5 783 aaPredicted RBP14.35□□□□□ -0.11
CLN3-239ENST00000628023 V9GYH0 126 aa14.35□□□□□ -0.11
CLN3-239ENST00000628023 LINC00473A8K010 186 aa14.34□□□□□ -0.11
CLN3-239ENST00000628023 SHOXO15266 292 aa14.34□□□□□ -0.11
CLN3-239ENST00000628023 GSTZ1O43708 216 aaPredicted RBP14.34□□□□□ -0.11
CLN3-239ENST00000628023 FCGR3BO75015 233 aa14.34□□□□□ -0.11
CLN3-239ENST00000628023 RAB3DO95716 219 aa14.34□□□□□ -0.11
CLN3-239ENST00000628023 IGLV2-14P01704 120 aa14.34□□□□□ -0.11
CLN3-239ENST00000628023 STEAP1BQ6NZ63 245 aa14.34□□□□□ -0.11
CLN3-239ENST00000628023 ZNF66Q6ZN08 573 aa14.34□□□□□ -0.11
CLN3-239ENST00000628023 SLC35E3Q7Z769 313 aa14.34□□□□□ -0.11
CLN3-239ENST00000628023 CCDC190Q86UF4 302 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms