RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 NXT1Q9UKK6 140 aaKnown RBP0.16□□□□□ -2.38
SCN1A-208ENST00000625916 IGHV1-18A0A0C4DH31 117 aa0.15□□□□□ -2.39
SCN1A-208ENST00000625916 OTCP00480 354 aa0.15□□□□□ -2.39
SCN1A-208ENST00000625916 PSMB8P28062 276 aa0.15□□□□□ -2.39
SCN1A-208ENST00000625916 CA7P43166 264 aa0.15□□□□□ -2.39
SCN1A-208ENST00000625916 GABRA2P47869 451 aa0.15□□□□□ -2.39
SCN1A-208ENST00000625916 RBM11P57052 281 aaKnown RBP0.15□□□□□ -2.39
SCN1A-208ENST00000625916 FAM173BQ6P4H8 233 aa0.15□□□□□ -2.39
SCN1A-208ENST00000625916 DCXRQ7Z4W1 244 aa0.15□□□□□ -2.39
SCN1A-208ENST00000625916 SPATA12Q7Z6I5 190 aa0.15□□□□□ -2.39
SCN1A-208ENST00000625916 TMEM86AQ8N2M4 240 aa0.15□□□□□ -2.39
SCN1A-208ENST00000625916 CDRT4Q8N9R6 151 aa0.15□□□□□ -2.39
SCN1A-208ENST00000625916 OR13C8Q8NGS7 320 aa0.15□□□□□ -2.39
SCN1A-208ENST00000625916 MRPL57Q9BQC6 102 aaKnown RBP0.15□□□□□ -2.39
SCN1A-208ENST00000625916 TMEM222Q9H0R3 208 aa0.15□□□□□ -2.39
SCN1A-208ENST00000625916 RTTNQ86VV8 2226 aa0.15□□□□□ -2.39
SCN1A-208ENST00000625916 MUC2Q02817 5179 aa0.15□□□□□ -2.39
SCN1A-208ENST00000625916 WDR90Q96KV7 1748 aa0.15□□□□□ -2.39
SCN1A-208ENST00000625916 DSCAML1Q8TD84 2053 aa0.15□□□□□ -2.39
SCN1A-208ENST00000625916 SSPOA2VEC9 5147 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 A0A0D9SEW6 157 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 A0A1B0GX12 115 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 CREBL2O60519 120 aaPredicted RBP0.14□□□□□ -2.39
SCN1A-208ENST00000625916 ARL6IP5O75915 188 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 HBZP02008 142 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 SFTPCP11686 197 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 NQO2P16083 231 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 ADORA1P30542 326 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 AGTR1P30556 359 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 OR10J1P30954 320 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 CA5AP35218 305 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 CRATP43155 626 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 TPI1P60174 286 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 AP1S1P61966 158 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 HERVK_113P63121 156 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 RAB31Q13636 194 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 PLPPR5Q32ZL2 321 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 SCGB1D4Q6XE38 83 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 ATP5L2Q7Z4Y8 100 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 BAP18Q8IXM2 172 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 LRRC34Q8IZ02 419 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 ZNF439Q8NDP4 499 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 ZNF675Q8TD23 568 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 CCDC12Q8WUD4 166 aaPredicted RBP0.14□□□□□ -2.39
SCN1A-208ENST00000625916 TMEM239Q8WW34 195 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 PPWD1Q96BP3 646 aaKnown RBP0.14□□□□□ -2.39
SCN1A-208ENST00000625916 UGT2B28Q9BY64 529 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 REG4Q9BYZ8 158 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 TTTY13Q9BZ97 58 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 UBQLN4Q9NRR5 601 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 MAT2BQ9NZL9 334 aa0.14□□□□□ -2.39
SCN1A-208ENST00000625916 POLR3HQ9Y535 204 aaPredicted RBP0.14□□□□□ -2.39
SCN1A-208ENST00000625916 TECTAO75443 2155 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 TTC28Q96AY4 2481 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 TRAV38-1A0A0B4J264 116 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 H7C2G1 150 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 COPEO14579 308 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 MRASO14807 208 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 LIN7AO14910 233 aaPredicted RBP0.13□□□□□ -2.39
SCN1A-208ENST00000625916 UGT2B11O75310 529 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 LDOC1O95751 146 aaPredicted RBP0.13□□□□□ -2.39
SCN1A-208ENST00000625916 CSTAP01040 98 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 OR10A3P58181 314 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 DAD1P61803 113 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 HIST1H4AP62805 103 aaKnown RBP0.13□□□□□ -2.39
SCN1A-208ENST00000625916 TNNC1P63316 161 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 CDK10Q15131 360 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 MIAQ16674 131 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 C18orf21Q32NC0 220 aaPredicted RBP0.13□□□□□ -2.39
SCN1A-208ENST00000625916 XKRXQ6PP77 449 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 CPNE2Q96FN4 548 aaPredicted RBP0.13□□□□□ -2.39
SCN1A-208ENST00000625916 SFRP2Q96HF1 295 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 OR7D2Q96RA2 312 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 IMMP2LQ96T52 175 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 NMNAT3Q96T66 252 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 HBEGFQ99075 208 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 BCL7BQ9BQE9 202 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 GNB1LQ9BYB4 327 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 RAB1BQ9H0U4 201 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 OR51B6Q9H340 312 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 RABL2AQ9UBK7 228 aaPredicted RBP0.13□□□□□ -2.39
SCN1A-208ENST00000625916 RBMX2Q9Y388 322 aaKnown RBP0.13□□□□□ -2.39
SCN1A-208ENST00000625916 SBDSQ9Y3A5 250 aaKnown RBP eCLIP0.13□□□□□ -2.39
SCN1A-208ENST00000625916 FLT4P35916 1363 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 MYH11P35749 1972 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 MYOFQ9NZM1 2061 aa0.13□□□□□ -2.39
SCN1A-208ENST00000625916 ANKRD17O75179 2603 aaKnown RBP0.13□□□□□ -2.39
SCN1A-208ENST00000625916 DIDO1Q9BTC0 2240 aaKnown RBP0.13□□□□□ -2.39
SCN1A-208ENST00000625916 POLEQ07864 2286 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 REREQ9P2R6 1566 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 CACNA1BQ00975 2339 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 TRAV7A0A075B6U4 112 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 A0A0J9YW62 118 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 MEIS3P1A6NDR6 274 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 SULT1C2O00338 296 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 ASS1P00966 412 aaKnown RBP0.12□□□□□ -2.39
SCN1A-208ENST00000625916 LGALS1P09382 135 aaKnown RBP0.12□□□□□ -2.39
SCN1A-208ENST00000625916 LIMS3P0CW19 117 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 LIMS4P0CW20 117 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 DEFA4P12838 97 aa0.12□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms