RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 TMEM108Q6UXF1 575 aa17.72■□□□□ 0.43
LIME1-210ENST00000621325 FAM90A1Q86YD7 464 aa17.72■□□□□ 0.43
LIME1-210ENST00000621325 TREM1Q9NP99 234 aa17.72■□□□□ 0.43
LIME1-210ENST00000621325 JKAMPQ9P055 326 aa17.72■□□□□ 0.43
LIME1-210ENST00000621325 FAM96BQ9Y3D0 163 aa17.72■□□□□ 0.43
LIME1-210ENST00000621325 DSCAMO60469 2012 aa17.72■□□□□ 0.43
LIME1-210ENST00000621325 AGPAT2O15120 278 aa17.71■□□□□ 0.43
LIME1-210ENST00000621325 SLC25A6P12236 298 aa17.71■□□□□ 0.43
LIME1-210ENST00000621325 BRWD1-AS2P59051 145 aa17.71■□□□□ 0.43
LIME1-210ENST00000621325 SELENOVP59797 346 aa17.71■□□□□ 0.43
LIME1-210ENST00000621325 PAX5Q02548 391 aa17.71■□□□□ 0.43
LIME1-210ENST00000621325 BTNL8Q6UX41 500 aa17.71■□□□□ 0.43
LIME1-210ENST00000621325 OR5C1Q8NGR4 320 aa17.71■□□□□ 0.43
LIME1-210ENST00000621325 SNX22Q96L94 193 aa17.71■□□□□ 0.43
LIME1-210ENST00000621325 C2orf88Q9BSF0 95 aa17.71■□□□□ 0.43
LIME1-210ENST00000621325 CYB5R3P00387 301 aaPredicted RBP17.71■□□□□ 0.43
LIME1-210ENST00000621325 SEC11BP0C7V7 166 aa17.71■□□□□ 0.43
LIME1-210ENST00000621325 DYNLT3P51808 116 aa17.71■□□□□ 0.43
LIME1-210ENST00000621325 FGFRL1Q8N441 504 aa17.71■□□□□ 0.43
LIME1-210ENST00000621325 SLC25A31Q9H0C2 315 aa17.71■□□□□ 0.43
LIME1-210ENST00000621325 PSG11Q9UQ72 335 aa17.71■□□□□ 0.43
LIME1-210ENST00000621325 RAXQ9Y2V3 346 aa17.71■□□□□ 0.43
LIME1-210ENST00000621325 SPTBN4Q9H254 2564 aa17.71■□□□□ 0.43
LIME1-210ENST00000621325 MED19A0JLT2 244 aaPredicted RBP17.7■□□□□ 0.42
LIME1-210ENST00000621325 MGST3O14880 152 aa17.7■□□□□ 0.42
LIME1-210ENST00000621325 GATA4P43694 442 aa17.7■□□□□ 0.42
LIME1-210ENST00000621325 BSPH1Q075Z2 132 aa17.7■□□□□ 0.42
LIME1-210ENST00000621325 KDF1Q8NAX2 398 aaPredicted RBP17.7■□□□□ 0.42
LIME1-210ENST00000621325 FAM212BQ9NTI7 297 aaPredicted RBP17.7■□□□□ 0.42
LIME1-210ENST00000621325 GFOD1Q9NXC2 390 aa17.7■□□□□ 0.42
LIME1-210ENST00000621325 AP4M1O00189 453 aa17.7■□□□□ 0.42
LIME1-210ENST00000621325 SPINT2O43291 252 aa17.7■□□□□ 0.42
LIME1-210ENST00000621325 MBP02144 154 aa17.7■□□□□ 0.42
LIME1-210ENST00000621325 DDTP30046 118 aa17.7■□□□□ 0.42
LIME1-210ENST00000621325 EDDM3BP56851 147 aa17.7■□□□□ 0.42
LIME1-210ENST00000621325 ZNF816Q0VGE8 651 aaPredicted RBP17.7■□□□□ 0.42
LIME1-210ENST00000621325 DEFB108BQ8NET1 73 aa17.7■□□□□ 0.42
LIME1-210ENST00000621325 NUP37Q8NFH4 326 aa17.7■□□□□ 0.42
LIME1-210ENST00000621325 AGMATQ9BSE5 352 aa17.7■□□□□ 0.42
LIME1-210ENST00000621325 SEC11CQ9BY50 192 aa17.7■□□□□ 0.42
LIME1-210ENST00000621325 PARP11Q9NR21 331 aa17.7■□□□□ 0.42
LIME1-210ENST00000621325 A0A087X0M5 115 aa17.69■□□□□ 0.42
LIME1-210ENST00000621325 A0A1B0GX30 115 aa17.69■□□□□ 0.42
LIME1-210ENST00000621325 RNF212BA8MTL3 300 aa17.69■□□□□ 0.42
LIME1-210ENST00000621325 C17orf98A8MV24 154 aa17.69■□□□□ 0.42
LIME1-210ENST00000621325 K7N7A8 449 aa17.69■□□□□ 0.42
LIME1-210ENST00000621325 IGHV3-7P01780 117 aa17.69■□□□□ 0.42
LIME1-210ENST00000621325 MMP9P14780 707 aa17.69■□□□□ 0.42
LIME1-210ENST00000621325 F2RL1P55085 397 aa17.69■□□□□ 0.42
LIME1-210ENST00000621325 RAB4BP61018 213 aa17.69■□□□□ 0.42
LIME1-210ENST00000621325 IL34Q6ZMJ4 242 aa17.69■□□□□ 0.42
LIME1-210ENST00000621325 ZCCHC24Q8N2G6 241 aaKnown RBP17.69■□□□□ 0.42
LIME1-210ENST00000621325 C15orf54Q8N8G6 183 aa17.69■□□□□ 0.42
LIME1-210ENST00000621325 ZBTB34Q8NCN2 500 aa17.69■□□□□ 0.42
LIME1-210ENST00000621325 PRO1933Q9H354 126 aa17.69■□□□□ 0.42
LIME1-210ENST00000621325 YIF1AO95070 293 aa17.69■□□□□ 0.42
LIME1-210ENST00000621325 DANCRP0C864 163 aa17.69■□□□□ 0.42
LIME1-210ENST00000621325 IAPPP10997 89 aa17.69■□□□□ 0.42
LIME1-210ENST00000621325 RPP30P78346 268 aaKnown RBP17.69■□□□□ 0.42
LIME1-210ENST00000621325 SMCO4Q9NRQ5 59 aa17.69■□□□□ 0.42
LIME1-210ENST00000621325 RNF7Q9UBF6 113 aa17.69■□□□□ 0.42
LIME1-210ENST00000621325 IL19Q9UHD0 177 aa17.69■□□□□ 0.42
LIME1-210ENST00000621325 IFITM10A6NMD0 228 aa17.68■□□□□ 0.42
LIME1-210ENST00000621325 KRASP01116 189 aa17.68■□□□□ 0.42
LIME1-210ENST00000621325 UTF1Q5T230 341 aa17.68■□□□□ 0.42
LIME1-210ENST00000621325 UQCC1Q9NVA1 299 aa17.68■□□□□ 0.42
LIME1-210ENST00000621325 LINC00473A8K010 186 aa17.68■□□□□ 0.42
LIME1-210ENST00000621325 G6PCP35575 357 aa17.68■□□□□ 0.42
LIME1-210ENST00000621325 HTD2P86397 168 aa17.68■□□□□ 0.42
LIME1-210ENST00000621325 TMEM267Q0VDI3 215 aaPredicted RBP17.68■□□□□ 0.42
LIME1-210ENST00000621325 ADIPOQQ15848 244 aa17.68■□□□□ 0.42
LIME1-210ENST00000621325 PIGBOS1A0A0B4J2F0 54 aa17.67■□□□□ 0.42
LIME1-210ENST00000621325 NUDT19A8MXV4 375 aa17.67■□□□□ 0.42
LIME1-210ENST00000621325 S1PR2O95136 353 aa17.67■□□□□ 0.42
LIME1-210ENST00000621325 OR4A8P0C604 315 aa17.67■□□□□ 0.42
LIME1-210ENST00000621325 TMPRSS3P57727 454 aa17.67■□□□□ 0.42
LIME1-210ENST00000621325 CCL8P80075 99 aa17.67■□□□□ 0.42
LIME1-210ENST00000621325 ADAM5Q6NVV9 412 aa17.67■□□□□ 0.42
LIME1-210ENST00000621325 TMEM182Q6ZP80 229 aaPredicted RBP17.67■□□□□ 0.42
LIME1-210ENST00000621325 PPP1R35Q8TAP8 253 aa17.67■□□□□ 0.42
LIME1-210ENST00000621325 GNG12Q9UBI6 72 aa17.67■□□□□ 0.42
LIME1-210ENST00000621325 CACFD1Q9UGQ2 172 aa17.67■□□□□ 0.42
LIME1-210ENST00000621325 PKDREJQ9NTG1 2253 aa17.67■□□□□ 0.42
LIME1-210ENST00000621325 SYNGR2O43760 224 aa17.67■□□□□ 0.42
LIME1-210ENST00000621325 CLDN1O95832 211 aa17.67■□□□□ 0.42
LIME1-210ENST00000621325 GZMHP20718 246 aa17.67■□□□□ 0.42
LIME1-210ENST00000621325 ATP6V0CP27449 155 aa17.67■□□□□ 0.42
LIME1-210ENST00000621325 OR2B8PP59922 312 aa17.67■□□□□ 0.42
LIME1-210ENST00000621325 TRAT1Q6PIZ9 186 aa17.67■□□□□ 0.42
LIME1-210ENST00000621325 FAM222BQ8WU58 562 aa17.67■□□□□ 0.42
LIME1-210ENST00000621325 UNKLQ9H9P5 680 aaKnown RBP17.67■□□□□ 0.42
LIME1-210ENST00000621325 PROP1O75360 226 aa17.66■□□□□ 0.42
LIME1-210ENST00000621325 ADH4P08319 380 aa17.66■□□□□ 0.42
LIME1-210ENST00000621325 ZNF616Q08AN1 781 aa17.66■□□□□ 0.42
LIME1-210ENST00000621325 ZNF266Q14584 549 aa17.66■□□□□ 0.42
LIME1-210ENST00000621325 RAB40CQ96S21 281 aa17.66■□□□□ 0.42
LIME1-210ENST00000621325 KCNJ16Q9NPI9 418 aa17.66■□□□□ 0.42
LIME1-210ENST00000621325 ZZEF1O43149 2961 aa17.66■□□□□ 0.42
LIME1-210ENST00000621325 hCG_1809904A0A1W2PP81 198 aa17.66■□□□□ 0.42
LIME1-210ENST00000621325 A0A1W2PR64 198 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms