RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 STARD4Q96DR4 205 aa9.17□□□□□ -0.94
UPF3A-212ENST00000619079 SPOCK3Q9BQ16 436 aa9.17□□□□□ -0.94
UPF3A-212ENST00000619079 COX11Q9Y6N1 276 aa9.17□□□□□ -0.94
UPF3A-212ENST00000619079 UNC13CQ8NB66 2214 aa9.17□□□□□ -0.94
UPF3A-212ENST00000619079 C1QTNF9BB2RNN3 333 aa9.17□□□□□ -0.94
UPF3A-212ENST00000619079 NTN3O00634 580 aaPredicted RBP9.17□□□□□ -0.94
UPF3A-212ENST00000619079 HMGB3O15347 200 aaKnown RBP9.17□□□□□ -0.94
UPF3A-212ENST00000619079 TRAPPC6AO75865 159 aa9.17□□□□□ -0.94
UPF3A-212ENST00000619079 MT-CO3P00414 261 aa9.17□□□□□ -0.94
UPF3A-212ENST00000619079 IGLC2P0DOY2 106 aa9.17□□□□□ -0.94
UPF3A-212ENST00000619079 IGLC3P0DOY3 106 aa9.17□□□□□ -0.94
UPF3A-212ENST00000619079 LINC00310P59036 64 aa9.17□□□□□ -0.94
UPF3A-212ENST00000619079 CFHR1Q03591 330 aa9.17□□□□□ -0.94
UPF3A-212ENST00000619079 FFAR4Q5NUL3 377 aa9.17□□□□□ -0.94
UPF3A-212ENST00000619079 FAM27BQ5VT28 67 aa9.17□□□□□ -0.94
UPF3A-212ENST00000619079 Q6ZRM9 215 aa9.17□□□□□ -0.94
UPF3A-212ENST00000619079 TCTEX1D1Q8N7M0 179 aa9.17□□□□□ -0.94
UPF3A-212ENST00000619079 ZNF611Q8N823 705 aa9.17□□□□□ -0.94
UPF3A-212ENST00000619079 OR51H1Q8NH63 302 aa9.17□□□□□ -0.94
UPF3A-212ENST00000619079 RBM24Q9BX46 236 aaKnown RBP9.17□□□□□ -0.94
UPF3A-212ENST00000619079 MRPL18Q9H0U6 180 aaKnown RBP9.17□□□□□ -0.94
UPF3A-212ENST00000619079 BET1LQ9NYM9 111 aa9.17□□□□□ -0.94
UPF3A-212ENST00000619079 OR2W1Q9Y3N9 320 aa9.17□□□□□ -0.94
UPF3A-212ENST00000619079 C17orf112F2Z3M2 114 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 VAMP5O95183 116 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 KRTDAPP60985 99 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 TLE1Q04724 770 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 PDCD1Q15116 288 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 OR8G2PQ6IF36 304 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 TCF23Q7RTU1 214 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 GATAD1Q8WUU5 269 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 CCDC74BQ96LY2 380 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 LIN7CQ9NUP9 197 aaKnown RBP9.16□□□□□ -0.94
UPF3A-212ENST00000619079 PLA2G3Q9NZ20 509 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 MRPS16Q9Y3D3 137 aaKnown RBP9.16□□□□□ -0.94
UPF3A-212ENST00000619079 CHD3Q12873 2000 aaKnown RBP9.16□□□□□ -0.94
UPF3A-212ENST00000619079 SPTBN2O15020 2390 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 IGHV5-10-1A0A0J9YXX1 117 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 ZNF816-ZNF321PA0A0X1KG74 233 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 A8MXE2 369 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 AQP7O14520 342 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 TNFSF11O14788 317 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 HYPMO75409 117 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 GPX1P07203 203 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 NPPCP23582 126 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 ZNF90Q03938 601 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 FOXC1Q12948 553 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 OR10G8Q8NGN5 311 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 OR1F12Q8NHA8 337 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 APH1AQ96BI3 265 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 METTL7AQ9H8H3 244 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 TUBG2Q9NRH3 451 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 SLC35D1Q9NTN3 355 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 HSPB7Q9UBY9 170 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 CDC42EP3Q9UKI2 254 aa9.16□□□□□ -0.94
UPF3A-212ENST00000619079 NCOA6Q14686 2063 aaPredicted RBP9.16□□□□□ -0.94
UPF3A-212ENST00000619079 H3BMH7 237 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 ZNF253O75346 499 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 NXPH2O95156 264 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 C1QTNF9P0C862 333 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 CDC34P49427 236 aaPredicted RBP9.15□□□□□ -0.94
UPF3A-212ENST00000619079 GNB1P62873 340 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 ETFRF1Q6IPR1 90 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 C16orf47Q6ZP98 133 aaPredicted RBP9.15□□□□□ -0.94
UPF3A-212ENST00000619079 GCNT2Q8N0V5 402 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 OR4C5Q8NGB2 326 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 OR5B3Q8NH48 314 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 ULBP2Q9BZM5 246 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 FBXL7Q9UJT9 491 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 IGHV2OR16-5A0A0B4J2B6 119 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 IGHV2-70DA0A0C4DH43 119 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 IGKV1-6A0A0C4DH72 117 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 hCG_38984A0A1B0GV85 526 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 NPIPA2E9PIF3 369 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 NPIPA3F8WFD2 350 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 SYNGR3O43761 229 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 NDUFB4O95168 129 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 CLDN1O95832 211 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 MT-ND6P03923 174 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 REG1AP05451 166 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 CBLN1P23435 193 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 CEACAM8P31997 349 aaPredicted RBP9.15□□□□□ -0.94
UPF3A-212ENST00000619079 TIMP3P35625 211 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 RPS20P60866 119 aaKnown RBP9.15□□□□□ -0.94
UPF3A-212ENST00000619079 DAZAP2Q15038 168 aaPredicted RBP9.15□□□□□ -0.94
UPF3A-212ENST00000619079 SAXO1Q8IYX7 474 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 LYG1Q8N1E2 194 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 OR1L6Q8NGR2 347 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 PSMF1Q92530 271 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 CORO2AQ92828 525 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 ALKBH3Q96Q83 286 aaPredicted RBP9.15□□□□□ -0.94
UPF3A-212ENST00000619079 IL36BQ9NZH7 164 aa9.15□□□□□ -0.94
UPF3A-212ENST00000619079 ASPMQ8IZT6 3477 aa9.15□□□□□ -0.95
UPF3A-212ENST00000619079 SAA2-SAA4A0A096LPE2 208 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 A0A1B0GX78 115 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 RNF212BA8MTL3 300 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 FCN1O00602 326 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 IGKV1-5P01602 117 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 FGF12P61328 243 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 IZUMO4Q1ZYL8 232 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 201.3 ms