RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 LIN54Q6MZP7 749 aa12.54□□□□□ -0.4
BRCA1-228ENST00000618469 CNIH2Q6PI25 160 aa12.54□□□□□ -0.4
BRCA1-228ENST00000618469 C18orf65Q6ZTR6 163 aa12.54□□□□□ -0.4
BRCA1-228ENST00000618469 GVQW1Q8N7I0 195 aa12.54□□□□□ -0.4
BRCA1-228ENST00000618469 BEST4Q8NFU0 473 aa12.54□□□□□ -0.4
BRCA1-228ENST00000618469 TSNAXQ99598 290 aaKnown RBP12.54□□□□□ -0.4
BRCA1-228ENST00000618469 MRPS26Q9BYN8 205 aaKnown RBP12.54□□□□□ -0.4
BRCA1-228ENST00000618469 AUNIPQ9H7T9 357 aa12.54□□□□□ -0.4
BRCA1-228ENST00000618469 METTL1Q9UBP6 276 aaKnown RBP12.54□□□□□ -0.4
BRCA1-228ENST00000618469 ZNF580Q9UK33 172 aa12.54□□□□□ -0.4
BRCA1-228ENST00000618469 NOTCH3Q9UM47 2321 aa12.54□□□□□ -0.4
BRCA1-228ENST00000618469 G3V318 75 aa12.53□□□□□ -0.4
BRCA1-228ENST00000618469 SPDEFO95238 335 aa12.53□□□□□ -0.4
BRCA1-228ENST00000618469 RPLP1P05386 114 aaKnown RBP12.53□□□□□ -0.4
BRCA1-228ENST00000618469 FCER2P06734 321 aa12.53□□□□□ -0.4
BRCA1-228ENST00000618469 CD33P20138 364 aa12.53□□□□□ -0.4
BRCA1-228ENST00000618469 THBS3P49746 956 aa12.53□□□□□ -0.4
BRCA1-228ENST00000618469 RPS16P62249 146 aaKnown RBP12.53□□□□□ -0.4
BRCA1-228ENST00000618469 FOXE3Q13461 319 aa12.53□□□□□ -0.4
BRCA1-228ENST00000618469 PSG5Q15238 335 aa12.53□□□□□ -0.4
BRCA1-228ENST00000618469 ECSCRQ19T08 205 aa12.53□□□□□ -0.4
BRCA1-228ENST00000618469 TMEM69Q5SWH9 247 aa12.53□□□□□ -0.4
BRCA1-228ENST00000618469 C11orf87Q6NUJ2 197 aa12.53□□□□□ -0.4
BRCA1-228ENST00000618469 C8orf86Q6ZUL3 223 aa12.53□□□□□ -0.4
BRCA1-228ENST00000618469 ABHD5Q8WTS1 349 aa12.53□□□□□ -0.4
BRCA1-228ENST00000618469 FLYWCH2Q96CP2 140 aaKnown RBP12.53□□□□□ -0.4
BRCA1-228ENST00000618469 S100A16Q96FQ6 103 aaKnown RBP12.53□□□□□ -0.4
BRCA1-228ENST00000618469 HARBI1Q96MB7 349 aa12.53□□□□□ -0.4
BRCA1-228ENST00000618469 RNF5Q99942 180 aa12.53□□□□□ -0.4
BRCA1-228ENST00000618469 NAA50Q9GZZ1 169 aaKnown RBP12.53□□□□□ -0.4
BRCA1-228ENST00000618469 GAB2Q9UQC2 676 aa12.53□□□□□ -0.4
BRCA1-228ENST00000618469 OR2W1Q9Y3N9 320 aa12.53□□□□□ -0.4
BRCA1-228ENST00000618469 WSB1Q9Y6I7 421 aa12.53□□□□□ -0.4
BRCA1-228ENST00000618469 MEIS3P1A6NDR6 274 aa12.52□□□□□ -0.41
BRCA1-228ENST00000618469 XRCC3O43542 346 aa12.52□□□□□ -0.41
BRCA1-228ENST00000618469 SLC25A17O43808 307 aa12.52□□□□□ -0.41
BRCA1-228ENST00000618469 GABARAPO95166 117 aa12.52□□□□□ -0.41
BRCA1-228ENST00000618469 IGHG4P01861 327 aa12.52□□□□□ -0.41
BRCA1-228ENST00000618469 ELANEP08246 267 aa12.52□□□□□ -0.41
BRCA1-228ENST00000618469 LUMP51884 338 aaPredicted RBP12.52□□□□□ -0.41
BRCA1-228ENST00000618469 CBX3Q13185 183 aa12.52□□□□□ -0.41
BRCA1-228ENST00000618469 RTL8BQ17RB0 113 aa12.52□□□□□ -0.41
BRCA1-228ENST00000618469 VAX1Q5SQQ9 334 aa12.52□□□□□ -0.41
BRCA1-228ENST00000618469 ETV3LQ6ZN32 361 aa12.52□□□□□ -0.41
BRCA1-228ENST00000618469 HOGA1Q86XE5 327 aa12.52□□□□□ -0.41
BRCA1-228ENST00000618469 ZNF645Q8N7E2 425 aa12.52□□□□□ -0.41
BRCA1-228ENST00000618469 KCTD12Q96CX2 325 aaKnown RBP12.52□□□□□ -0.41
BRCA1-228ENST00000618469 CLCC1Q96S66 551 aa12.52□□□□□ -0.41
BRCA1-228ENST00000618469 TPSG1Q9NRR2 321 aa12.52□□□□□ -0.41
BRCA1-228ENST00000618469 ZFP57Q9NU63 452 aa12.52□□□□□ -0.41
BRCA1-228ENST00000618469 COMMD3Q9UBI1 195 aa12.52□□□□□ -0.41
BRCA1-228ENST00000618469 FBXO7Q9Y3I1 522 aa12.52□□□□□ -0.41
BRCA1-228ENST00000618469 A3GALT2U3KPV4 340 aa12.52□□□□□ -0.41
BRCA1-228ENST00000618469 TRAV41A0A0B4J266 112 aa12.51□□□□□ -0.41
BRCA1-228ENST00000618469 IGKV1D-13A0A0B4J2D9 117 aa12.51□□□□□ -0.41
BRCA1-228ENST00000618469 CA2P00918 260 aa12.51□□□□□ -0.41
BRCA1-228ENST00000618469 EIF4EP06730 217 aaKnown RBP12.51□□□□□ -0.41
BRCA1-228ENST00000618469 IGKV1-13P0DP09 117 aa12.51□□□□□ -0.41
BRCA1-228ENST00000618469 TAS2R20P59543 309 aa12.51□□□□□ -0.41
BRCA1-228ENST00000618469 CX3CL1P78423 397 aa12.51□□□□□ -0.41
BRCA1-228ENST00000618469 GPR107Q5VW38 600 aa12.51□□□□□ -0.41
BRCA1-228ENST00000618469 ANKRD13BQ86YJ7 626 aa12.51□□□□□ -0.41
BRCA1-228ENST00000618469 ZNF695Q8IW36 515 aa12.51□□□□□ -0.41
BRCA1-228ENST00000618469 BVESQ8NE79 360 aa12.51□□□□□ -0.41
BRCA1-228ENST00000618469 ADTRPQ96IZ2 230 aa12.51□□□□□ -0.41
BRCA1-228ENST00000618469 IFT46Q9NQC8 304 aa12.51□□□□□ -0.41
BRCA1-228ENST00000618469 AURKAIP1Q9NWT8 199 aaPredicted RBP12.51□□□□□ -0.41
BRCA1-228ENST00000618469 LINC00473A8K010 186 aa12.5□□□□□ -0.41
BRCA1-228ENST00000618469 FCN1O00602 326 aa12.5□□□□□ -0.41
BRCA1-228ENST00000618469 SHOXO15266 292 aa12.5□□□□□ -0.41
BRCA1-228ENST00000618469 HLA-DQB1P01920 261 aa12.5□□□□□ -0.41
BRCA1-228ENST00000618469 PSMB8P28062 276 aa12.5□□□□□ -0.41
BRCA1-228ENST00000618469 SLC6A1P30531 599 aa12.5□□□□□ -0.41
BRCA1-228ENST00000618469 DUTP33316 252 aaKnown RBP12.5□□□□□ -0.41
BRCA1-228ENST00000618469 CBX5P45973 191 aa12.5□□□□□ -0.41
BRCA1-228ENST00000618469 TAGLNQ01995 201 aaKnown RBP12.5□□□□□ -0.41
BRCA1-228ENST00000618469 CTF1Q16619 201 aa12.5□□□□□ -0.41
BRCA1-228ENST00000618469 ZNF660Q6AZW8 331 aaPredicted RBP12.5□□□□□ -0.41
BRCA1-228ENST00000618469 KCTD9Q7L273 389 aa12.5□□□□□ -0.41
BRCA1-228ENST00000618469 REC114Q7Z4M0 266 aa12.5□□□□□ -0.41
BRCA1-228ENST00000618469 GPR141Q7Z602 305 aa12.5□□□□□ -0.41
BRCA1-228ENST00000618469 RNF152Q8N8N0 203 aa12.5□□□□□ -0.41
BRCA1-228ENST00000618469 SNAPC3Q92966 411 aa12.5□□□□□ -0.41
BRCA1-228ENST00000618469 FAM103A1Q9BTL3 118 aaKnown RBP12.5□□□□□ -0.41
BRCA1-228ENST00000618469 A0A1W2PN81 502 aa12.49□□□□□ -0.41
BRCA1-228ENST00000618469 TUSC2O75896 110 aa12.49□□□□□ -0.41
BRCA1-228ENST00000618469 CRYZL1O95825 349 aa12.49□□□□□ -0.41
BRCA1-228ENST00000618469 IGLV2-23P01705 113 aa12.49□□□□□ -0.41
BRCA1-228ENST00000618469 RRASP10301 218 aa12.49□□□□□ -0.41
BRCA1-228ENST00000618469 IGLL1P15814 213 aa12.49□□□□□ -0.41
BRCA1-228ENST00000618469 CHRNA7P36544 502 aa12.49□□□□□ -0.41
BRCA1-228ENST00000618469 DEFB136Q30KP8 78 aa12.49□□□□□ -0.41
BRCA1-228ENST00000618469 TMEM177Q53S58 311 aa12.49□□□□□ -0.41
BRCA1-228ENST00000618469 LINC00482Q8N8I6 264 aa12.49□□□□□ -0.41
BRCA1-228ENST00000618469 DDB2Q92466 427 aa12.49□□□□□ -0.41
BRCA1-228ENST00000618469 DUX3Q96PT4 197 aa12.49□□□□□ -0.41
BRCA1-228ENST00000618469 NECAP2Q9NVZ3 263 aa12.49□□□□□ -0.41
BRCA1-228ENST00000618469 RBMX2Q9Y388 322 aaKnown RBP12.49□□□□□ -0.41
BRCA1-228ENST00000618469 SLC22A5O76082 557 aa12.48□□□□□ -0.41
BRCA1-228ENST00000618469 AADACP22760 399 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms