RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 ZNF182P17025 639 aaPredicted RBP12.72□□□□□ -0.37
LSM4-206ENST00000600289 DUTP33316 252 aaKnown RBP12.72□□□□□ -0.37
LSM4-206ENST00000600289 RPL5P46777 297 aaKnown RBP12.72□□□□□ -0.37
LSM4-206ENST00000600289 LUMP51884 338 aaPredicted RBP12.72□□□□□ -0.37
LSM4-206ENST00000600289 CRIP2P52943 208 aaPredicted RBP12.72□□□□□ -0.37
LSM4-206ENST00000600289 ARPC4P59998 168 aa12.72□□□□□ -0.37
LSM4-206ENST00000600289 MSMO1Q15800 293 aa12.72□□□□□ -0.37
LSM4-206ENST00000600289 MZT2AQ6P582 158 aa12.72□□□□□ -0.37
LSM4-206ENST00000600289 RNF152Q8N8N0 203 aa12.72□□□□□ -0.37
LSM4-206ENST00000600289 DRAXINQ8NBI3 349 aaPredicted RBP12.72□□□□□ -0.37
LSM4-206ENST00000600289 RAB2BQ8WUD1 216 aa12.72□□□□□ -0.37
LSM4-206ENST00000600289 DDB2Q92466 427 aa12.72□□□□□ -0.37
LSM4-206ENST00000600289 SNAPC3Q92966 411 aa12.72□□□□□ -0.37
LSM4-206ENST00000600289 TSNAXQ99598 290 aaKnown RBP12.72□□□□□ -0.37
LSM4-206ENST00000600289 SLC35D1Q9NTN3 355 aa12.72□□□□□ -0.37
LSM4-206ENST00000600289 NECAP2Q9NVZ3 263 aa12.72□□□□□ -0.37
LSM4-206ENST00000600289 RBM7Q9Y580 266 aaKnown RBP12.72□□□□□ -0.37
LSM4-206ENST00000600289 IGHV7-81A0A0B4J1V7 117 aa12.71□□□□□ -0.37
LSM4-206ENST00000600289 TCRBV4S1A1TA0A5B7 111 aa12.71□□□□□ -0.37
LSM4-206ENST00000600289 IGKV1-16P04430 117 aa12.71□□□□□ -0.37
LSM4-206ENST00000600289 OR5H8P0DN80 308 aa12.71□□□□□ -0.37
LSM4-206ENST00000600289 PTHLHP12272 177 aa12.71□□□□□ -0.37
LSM4-206ENST00000600289 NAT1P18440 290 aa12.71□□□□□ -0.37
LSM4-206ENST00000600289 NFYAP23511 347 aaPredicted RBP12.71□□□□□ -0.37
LSM4-206ENST00000600289 SLC6A1P30531 599 aa12.71□□□□□ -0.37
LSM4-206ENST00000600289 TMBIM6P55061 237 aa12.71□□□□□ -0.37
LSM4-206ENST00000600289 LINC00205P59089 165 aa12.71□□□□□ -0.37
LSM4-206ENST00000600289 NSUN5P1Q3KNT7 163 aa12.71□□□□□ -0.37
LSM4-206ENST00000600289 TMEM177Q53S58 311 aa12.71□□□□□ -0.37
LSM4-206ENST00000600289 LIN54Q6MZP7 749 aa12.71□□□□□ -0.37
LSM4-206ENST00000600289 OR5AP2Q8NGF4 316 aa12.71□□□□□ -0.37
LSM4-206ENST00000600289 FLYWCH2Q96CP2 140 aaKnown RBP12.71□□□□□ -0.37
LSM4-206ENST00000600289 OR51J1Q9H342 316 aa12.71□□□□□ -0.37
LSM4-206ENST00000600289 ZFP57Q9NU63 452 aa12.71□□□□□ -0.37
LSM4-206ENST00000600289 LINC00527Q9UJ94 153 aa12.71□□□□□ -0.37
LSM4-206ENST00000600289 PLXNB1O43157 2135 aa12.71□□□□□ -0.38
LSM4-206ENST00000600289 TPPPO94811 219 aa12.7□□□□□ -0.38
LSM4-206ENST00000600289 IGLV2-14P01704 120 aa12.7□□□□□ -0.38
LSM4-206ENST00000600289 ELK1P19419 428 aa12.7□□□□□ -0.38
LSM4-206ENST00000600289 VDAC1P21796 283 aa12.7□□□□□ -0.38
LSM4-206ENST00000600289 PRSS3P35030 304 aa12.7□□□□□ -0.38
LSM4-206ENST00000600289 LGALS7P47929 136 aa12.7□□□□□ -0.38
LSM4-206ENST00000600289 FOXE3Q13461 319 aa12.7□□□□□ -0.38
LSM4-206ENST00000600289 PSG5Q15238 335 aa12.7□□□□□ -0.38
LSM4-206ENST00000600289 ZNF660Q6AZW8 331 aaPredicted RBP12.7□□□□□ -0.38
LSM4-206ENST00000600289 TEX38Q6PEX7 206 aa12.7□□□□□ -0.38
LSM4-206ENST00000600289 OVCH2Q7RTZ1 564 aa12.7□□□□□ -0.38
LSM4-206ENST00000600289 ZNF329Q86UD4 541 aa12.7□□□□□ -0.38
LSM4-206ENST00000600289 C1QL4Q86Z23 238 aa12.7□□□□□ -0.38
LSM4-206ENST00000600289 CLVS1Q8IUQ0 354 aaPredicted RBP12.7□□□□□ -0.38
LSM4-206ENST00000600289 FAM110DQ8TAY7 271 aaPredicted RBP12.7□□□□□ -0.38
LSM4-206ENST00000600289 SCPEP1Q9HB40 452 aa12.7□□□□□ -0.38
LSM4-206ENST00000600289 ADAM30Q9UKF2 790 aa12.7□□□□□ -0.38
LSM4-206ENST00000600289 RBMX2Q9Y388 322 aaKnown RBP12.7□□□□□ -0.38
LSM4-206ENST00000600289 IGKV1D-13A0A0B4J2D9 117 aa12.69□□□□□ -0.38
LSM4-206ENST00000600289 SMIM31A0A1B0GVY4 71 aa12.69□□□□□ -0.38
LSM4-206ENST00000600289 LINC00473A8K010 186 aa12.69□□□□□ -0.38
LSM4-206ENST00000600289 HPGDSO60760 199 aa12.69□□□□□ -0.38
LSM4-206ENST00000600289 IGHG4P01861 327 aa12.69□□□□□ -0.38
LSM4-206ENST00000600289 ELANEP08246 267 aa12.69□□□□□ -0.38
LSM4-206ENST00000600289 IGKV1-13P0DP09 117 aa12.69□□□□□ -0.38
LSM4-206ENST00000600289 RPL23AP62750 156 aaKnown RBP12.69□□□□□ -0.38
LSM4-206ENST00000600289 CBX3Q13185 183 aa12.69□□□□□ -0.38
LSM4-206ENST00000600289 EIF4EBP1Q13541 118 aaPredicted RBP12.69□□□□□ -0.38
LSM4-206ENST00000600289 CDK10Q15131 360 aa12.69□□□□□ -0.38
LSM4-206ENST00000600289 RTL8BQ17RB0 113 aa12.69□□□□□ -0.38
LSM4-206ENST00000600289 GPX8Q8TED1 209 aa12.69□□□□□ -0.38
LSM4-206ENST00000600289 GIMAP1Q8WWP7 306 aa12.69□□□□□ -0.38
LSM4-206ENST00000600289 R3HDM4Q96D70 268 aa12.69□□□□□ -0.38
LSM4-206ENST00000600289 KRTAP17-1Q9BYP8 105 aa12.69□□□□□ -0.38
LSM4-206ENST00000600289 FBXL15Q9H469 300 aa12.69□□□□□ -0.38
LSM4-206ENST00000600289 IFT46Q9NQC8 304 aa12.69□□□□□ -0.38
LSM4-206ENST00000600289 METTL1Q9UBP6 276 aaKnown RBP12.69□□□□□ -0.38
LSM4-206ENST00000600289 COL7A1Q02388 2944 aa12.69□□□□□ -0.38
LSM4-206ENST00000600289 SULT1C2O00338 296 aa12.68□□□□□ -0.38
LSM4-206ENST00000600289 ATP6V0E1O15342 81 aa12.68□□□□□ -0.38
LSM4-206ENST00000600289 PPYP01298 95 aa12.68□□□□□ -0.38
LSM4-206ENST00000600289 IGLV2-23P01705 113 aa12.68□□□□□ -0.38
LSM4-206ENST00000600289 PPIFP30405 207 aaKnown RBP12.68□□□□□ -0.38
LSM4-206ENST00000600289 FCGR2CP31995 323 aa12.68□□□□□ -0.38
LSM4-206ENST00000600289 RPS16P62249 146 aaKnown RBP12.68□□□□□ -0.38
LSM4-206ENST00000600289 SPCS2Q15005 226 aa12.68□□□□□ -0.38
LSM4-206ENST00000600289 C19orf54Q5BKX5 351 aa12.68□□□□□ -0.38
LSM4-206ENST00000600289 TCTEX1D1Q8N7M0 179 aa12.68□□□□□ -0.38
LSM4-206ENST00000600289 BVESQ8NE79 360 aa12.68□□□□□ -0.38
LSM4-206ENST00000600289 OSR1Q8TAX0 266 aaPredicted RBP12.68□□□□□ -0.38
LSM4-206ENST00000600289 CRYGBP07316 175 aa12.67□□□□□ -0.38
LSM4-206ENST00000600289 AADACP22760 399 aa12.67□□□□□ -0.38
LSM4-206ENST00000600289 PSMB8P28062 276 aa12.67□□□□□ -0.38
LSM4-206ENST00000600289 TAS2R46P59540 309 aa12.67□□□□□ -0.38
LSM4-206ENST00000600289 CX3CL1P78423 397 aa12.67□□□□□ -0.38
LSM4-206ENST00000600289 NDPQ00604 133 aa12.67□□□□□ -0.38
LSM4-206ENST00000600289 PLGLAQ15195 96 aa12.67□□□□□ -0.38
LSM4-206ENST00000600289 ZNF562Q6V9R5 426 aa12.67□□□□□ -0.38
LSM4-206ENST00000600289 ZNF66Q6ZN08 573 aa12.67□□□□□ -0.38
LSM4-206ENST00000600289 KCTD9Q7L273 389 aa12.67□□□□□ -0.38
LSM4-206ENST00000600289 ZBTB34Q8NCN2 500 aa12.67□□□□□ -0.38
LSM4-206ENST00000600289 DYNC2LI1Q8TCX1 351 aa12.67□□□□□ -0.38
LSM4-206ENST00000600289 MYOZ3Q8TDC0 251 aa12.67□□□□□ -0.38
LSM4-206ENST00000600289 HARBI1Q96MB7 349 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms