RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 IGHMP01871 453 aa17.55■□□□□ 0.4
UPF1-207ENST00000599848 SPACA3Q8IXA5 215 aa17.55■□□□□ 0.4
UPF1-207ENST00000599848 QSER1Q2KHR3 1735 aa17.55■□□□□ 0.4
UPF1-207ENST00000599848 TMEM218A2RU14 115 aa17.55■□□□□ 0.4
UPF1-207ENST00000599848 EFEMP2O95967 443 aa17.55■□□□□ 0.4
UPF1-207ENST00000599848 TGFBR1P36897 503 aa17.55■□□□□ 0.4
UPF1-207ENST00000599848 ZNF841Q6ZN19 808 aa17.55■□□□□ 0.4
UPF1-207ENST00000599848 ZNF826PQ6ZT77 177 aa17.55■□□□□ 0.4
UPF1-207ENST00000599848 DTX2Q86UW9 622 aa17.55■□□□□ 0.4
UPF1-207ENST00000599848 TPRX1Q8N7U7 411 aa17.55■□□□□ 0.4
UPF1-207ENST00000599848 KIR2DL4Q99706 377 aa17.55■□□□□ 0.4
UPF1-207ENST00000599848 SLIRPQ9GZT3 109 aaKnown RBP17.55■□□□□ 0.4
UPF1-207ENST00000599848 OPN4Q9UHM6 478 aa17.55■□□□□ 0.4
UPF1-207ENST00000599848 OR51G1Q8NGK1 321 aa17.55■□□□□ 0.4
UPF1-207ENST00000599848 MARVELD1Q9BSK0 173 aa17.55■□□□□ 0.4
UPF1-207ENST00000599848 ALX4Q9H161 411 aaPredicted RBP17.55■□□□□ 0.4
UPF1-207ENST00000599848 MGAT2Q10469 447 aa17.54■□□□□ 0.4
UPF1-207ENST00000599848 TMSB15BA0A087X1C1 80 aa17.54■□□□□ 0.4
UPF1-207ENST00000599848 CD99P14209 185 aa17.54■□□□□ 0.4
UPF1-207ENST00000599848 ZP3P21754 424 aa17.54■□□□□ 0.4
UPF1-207ENST00000599848 DNAJC4Q9NNZ3 241 aa17.54■□□□□ 0.4
UPF1-207ENST00000599848 SPTA1P02549 2419 aa17.54■□□□□ 0.4
UPF1-207ENST00000599848 KIAA1551Q9HCM1 1747 aa17.54■□□□□ 0.4
UPF1-207ENST00000599848 SMIM10L1P0DMW3 83 aa17.54■□□□□ 0.4
UPF1-207ENST00000599848 C2CD4CQ8TF44 421 aa17.54■□□□□ 0.4
UPF1-207ENST00000599848 SMIM10Q96HG1 83 aa17.54■□□□□ 0.4
UPF1-207ENST00000599848 BET1LQ9NYM9 111 aa17.54■□□□□ 0.4
UPF1-207ENST00000599848 PRSS23O95084 383 aa17.53■□□□□ 0.4
UPF1-207ENST00000599848 LYZL2Q7Z4W2 148 aa17.53■□□□□ 0.4
UPF1-207ENST00000599848 TCL1AP56279 114 aa17.53■□□□□ 0.4
UPF1-207ENST00000599848 ERASQ7Z444 233 aa17.53■□□□□ 0.4
UPF1-207ENST00000599848 OR5AU1Q8NGC0 362 aa17.53■□□□□ 0.4
UPF1-207ENST00000599848 TMEM70Q9BUB7 260 aa17.53■□□□□ 0.4
UPF1-207ENST00000599848 NUP205Q92621 2012 aa17.53■□□□□ 0.4
UPF1-207ENST00000599848 RAB37Q96AX2 223 aa17.53■□□□□ 0.4
UPF1-207ENST00000599848 FER1L6Q2WGJ9 1857 aa17.53■□□□□ 0.4
UPF1-207ENST00000599848 PRSS2P07478 247 aa17.53■□□□□ 0.4
UPF1-207ENST00000599848 SPINK2P20155 84 aa17.53■□□□□ 0.4
UPF1-207ENST00000599848 BSPH1Q075Z2 132 aa17.53■□□□□ 0.4
UPF1-207ENST00000599848 AANATQ16613 207 aa17.53■□□□□ 0.4
UPF1-207ENST00000599848 OR4D11Q8NGI4 311 aa17.53■□□□□ 0.4
UPF1-207ENST00000599848 WNT5BQ9H1J7 359 aa17.53■□□□□ 0.4
UPF1-207ENST00000599848 FBLL1A6NHQ2 334 aaKnown RBP17.52■□□□□ 0.4
UPF1-207ENST00000599848 TMEM262E9PQX1 116 aa17.52■□□□□ 0.4
UPF1-207ENST00000599848 LCN2P80188 198 aa17.52■□□□□ 0.4
UPF1-207ENST00000599848 LRRC75AQ8NAA5 344 aa17.52■□□□□ 0.4
UPF1-207ENST00000599848 TMEM222Q9H0R3 208 aa17.52■□□□□ 0.4
UPF1-207ENST00000599848 NTN1O95631 604 aa17.52■□□□□ 0.4
UPF1-207ENST00000599848 GPR82Q96P67 336 aa17.52■□□□□ 0.4
UPF1-207ENST00000599848 CEACAM4O75871 244 aa17.52■□□□□ 0.4
UPF1-207ENST00000599848 PRSS8Q16651 343 aa17.52■□□□□ 0.4
UPF1-207ENST00000599848 PPP1R27Q86WC6 154 aa17.52■□□□□ 0.4
UPF1-207ENST00000599848 COL25A1Q9BXS0 654 aaPredicted RBP17.52■□□□□ 0.4
UPF1-207ENST00000599848 GEMIN7Q9H840 131 aaKnown RBP17.52■□□□□ 0.4
UPF1-207ENST00000599848 ZNF256Q9Y2P7 627 aaPredicted RBP17.52■□□□□ 0.4
UPF1-207ENST00000599848 IL18BPO95998 194 aa17.52■□□□□ 0.39
UPF1-207ENST00000599848 VSIG10L2P0DP72 767 aa17.52■□□□□ 0.39
UPF1-207ENST00000599848 ZNF708P17019 499 aa17.52■□□□□ 0.39
UPF1-207ENST00000599848 SHROOM3Q8TF72 1996 aa17.52■□□□□ 0.39
UPF1-207ENST00000599848 C8orf88P0DMB2 117 aa17.51■□□□□ 0.39
UPF1-207ENST00000599848 UNQ6494/PRO21346Q6UXR6 183 aa17.51■□□□□ 0.39
UPF1-207ENST00000599848 SRXN1Q9BYN0 137 aa17.51■□□□□ 0.39
UPF1-207ENST00000599848 MAP1LC3AQ9H492 121 aa17.51■□□□□ 0.39
UPF1-207ENST00000599848 FAM27E3Q08E93 113 aa17.51■□□□□ 0.39
UPF1-207ENST00000599848 GTSCR1Q86UQ5 136 aa17.51■□□□□ 0.39
UPF1-207ENST00000599848 CLRN3Q8NCR9 226 aa17.51■□□□□ 0.39
UPF1-207ENST00000599848 IGLV1-36A0A0B4J1U3 117 aa17.51■□□□□ 0.39
UPF1-207ENST00000599848 CACNA1CQ13936 2221 aa17.51■□□□□ 0.39
UPF1-207ENST00000599848 SMIM12Q96EX1 92 aa17.51■□□□□ 0.39
UPF1-207ENST00000599848 LAMB2P55268 1798 aa17.51■□□□□ 0.39
UPF1-207ENST00000599848 TNS1Q9HBL0 1735 aaKnown RBP17.51■□□□□ 0.39
UPF1-207ENST00000599848 CDK5RAP2Q96SN8 1893 aa17.51■□□□□ 0.39
UPF1-207ENST00000599848 TPRP12270 2363 aaKnown RBP17.51■□□□□ 0.39
UPF1-207ENST00000599848 IGKV1-8A0A0C4DH67 115 aa17.51■□□□□ 0.39
UPF1-207ENST00000599848 EIF4EBP2Q13542 120 aaPredicted RBP17.51■□□□□ 0.39
UPF1-207ENST00000599848 MRPL54Q6P161 138 aaKnown RBP17.51■□□□□ 0.39
UPF1-207ENST00000599848 TCF24Q7RTU0 167 aa17.51■□□□□ 0.39
UPF1-207ENST00000599848 OR13A1Q8NGR1 328 aa17.51■□□□□ 0.39
UPF1-207ENST00000599848 CKS2P33552 79 aa17.5■□□□□ 0.39
UPF1-207ENST00000599848 CLDND2Q8NHS1 167 aa17.5■□□□□ 0.39
UPF1-207ENST00000599848 TRAV8-7A0A075B6U6 113 aa17.5■□□□□ 0.39
UPF1-207ENST00000599848 PGPA6NDG6 321 aa17.5■□□□□ 0.39
UPF1-207ENST00000599848 MOSP00540 346 aa17.5■□□□□ 0.39
UPF1-207ENST00000599848 MVDP53602 400 aa17.5■□□□□ 0.39
UPF1-207ENST00000599848 OR4C5Q8NGB2 326 aa17.5■□□□□ 0.39
UPF1-207ENST00000599848 ZNF56Q15929 161 aa17.5■□□□□ 0.39
UPF1-207ENST00000599848 IGKV3D-15A0A087WSY6 115 aa17.49■□□□□ 0.39
UPF1-207ENST00000599848 C17orf100A8MU93 164 aa17.49■□□□□ 0.39
UPF1-207ENST00000599848 IGKV3-15P01624 115 aa17.49■□□□□ 0.39
UPF1-207ENST00000599848 PAX1P15863 534 aa17.49■□□□□ 0.39
UPF1-207ENST00000599848 HIST1H1AQ02539 215 aaPredicted RBP17.49■□□□□ 0.39
UPF1-207ENST00000599848 OR5P3Q8WZ94 311 aa17.49■□□□□ 0.39
UPF1-207ENST00000599848 EAF1Q96JC9 268 aaPredicted RBP17.49■□□□□ 0.39
UPF1-207ENST00000599848 C1orf100Q5SVJ3 147 aa17.49■□□□□ 0.39
UPF1-207ENST00000599848 OVCH2Q7RTZ1 564 aa17.49■□□□□ 0.39
UPF1-207ENST00000599848 RTN4RQ9BZR6 473 aa17.49■□□□□ 0.39
UPF1-207ENST00000599848 DUSP14O95147 198 aaKnown RBP17.49■□□□□ 0.39
UPF1-207ENST00000599848 LEMD1Q68G75 181 aa17.49■□□□□ 0.39
UPF1-207ENST00000599848 GDF9O60383 454 aa17.49■□□□□ 0.39
UPF1-207ENST00000599848 THBDP07204 575 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms