RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 C4orf3Q8WVX3 66 aa9.45□□□□□ -0.9
LIG1-217ENST00000599165 DDB2Q92466 427 aa9.45□□□□□ -0.9
LIG1-217ENST00000599165 OR2D2Q9H210 308 aa9.45□□□□□ -0.9
LIG1-217ENST00000599165 NUBP2Q9Y5Y2 271 aa9.45□□□□□ -0.9
LIG1-217ENST00000599165 LOC100506127A0A0U1RQW1 187 aa9.44□□□□□ -0.9
LIG1-217ENST00000599165 WI2-2373I1.2A0A1W2PRP0 233 aa9.44□□□□□ -0.9
LIG1-217ENST00000599165 TMEM235A6NFC5 223 aa9.44□□□□□ -0.9
LIG1-217ENST00000599165 H7C2Y5 167 aa9.44□□□□□ -0.9
LIG1-217ENST00000599165 I3L521 148 aa9.44□□□□□ -0.9
LIG1-217ENST00000599165 ARPC1BO15143 372 aaKnown RBP9.44□□□□□ -0.9
LIG1-217ENST00000599165 RBBP9O75884 186 aa9.44□□□□□ -0.9
LIG1-217ENST00000599165 IGLV2-14P01704 120 aa9.44□□□□□ -0.9
LIG1-217ENST00000599165 TFAP2AP05549 437 aa9.44□□□□□ -0.9
LIG1-217ENST00000599165 DTYMKP23919 212 aa9.44□□□□□ -0.9
LIG1-217ENST00000599165 ARFRP1Q13795 201 aa9.44□□□□□ -0.9
LIG1-217ENST00000599165 ZNF660Q6AZW8 331 aaPredicted RBP9.44□□□□□ -0.9
LIG1-217ENST00000599165 PDPNQ86YL7 162 aa9.44□□□□□ -0.9
LIG1-217ENST00000599165 ZNF491Q8N8L2 437 aa9.44□□□□□ -0.9
LIG1-217ENST00000599165 OR10J5Q8NHC4 309 aa9.44□□□□□ -0.9
LIG1-217ENST00000599165 CASTOR1Q8WTX7 329 aa9.44□□□□□ -0.9
LIG1-217ENST00000599165 YIPF6Q96EC8 236 aa9.44□□□□□ -0.9
LIG1-217ENST00000599165 RNF5Q99942 180 aa9.44□□□□□ -0.9
LIG1-217ENST00000599165 FAM103A1Q9BTL3 118 aaKnown RBP9.44□□□□□ -0.9
LIG1-217ENST00000599165 RHBDL2Q9NX52 303 aa9.44□□□□□ -0.9
LIG1-217ENST00000599165 KIAA1456Q9P272 454 aa9.44□□□□□ -0.9
LIG1-217ENST00000599165 METTL1Q9UBP6 276 aaKnown RBP9.44□□□□□ -0.9
LIG1-217ENST00000599165 ZNF221Q9UK13 617 aa9.44□□□□□ -0.9
LIG1-217ENST00000599165 TRIM64CA6NLI5 447 aa9.43□□□□□ -0.9
LIG1-217ENST00000599165 SRRM4A7MD48 611 aaKnown RBP9.43□□□□□ -0.9
LIG1-217ENST00000599165 LINC00473A8K010 186 aa9.43□□□□□ -0.9
LIG1-217ENST00000599165 DUS4LO95620 317 aaKnown RBP9.43□□□□□ -0.9
LIG1-217ENST00000599165 CA2P00918 260 aa9.43□□□□□ -0.9
LIG1-217ENST00000599165 GSTP1P09211 210 aaKnown RBP9.43□□□□□ -0.9
LIG1-217ENST00000599165 OR5H8P0DN80 308 aa9.43□□□□□ -0.9
LIG1-217ENST00000599165 GNB1P62873 340 aa9.43□□□□□ -0.9
LIG1-217ENST00000599165 ECSCRQ19T08 205 aa9.43□□□□□ -0.9
LIG1-217ENST00000599165 MRAPQ8TCY5 172 aa9.43□□□□□ -0.9
LIG1-217ENST00000599165 UBE2E2Q96LR5 201 aa9.43□□□□□ -0.9
LIG1-217ENST00000599165 CLCC1Q96S66 551 aa9.43□□□□□ -0.9
LIG1-217ENST00000599165 SLC35D1Q9NTN3 355 aa9.43□□□□□ -0.9
LIG1-217ENST00000599165 IGKV1D-13A0A0B4J2D9 117 aa9.42□□□□□ -0.9
LIG1-217ENST00000599165 SLC25A17O43808 307 aa9.42□□□□□ -0.9
LIG1-217ENST00000599165 SPDEFO95238 335 aa9.42□□□□□ -0.9
LIG1-217ENST00000599165 IGKV1-13P0DP09 117 aa9.42□□□□□ -0.9
LIG1-217ENST00000599165 DUTP33316 252 aaKnown RBP9.42□□□□□ -0.9
LIG1-217ENST00000599165 RAB9AP51151 201 aa9.42□□□□□ -0.9
LIG1-217ENST00000599165 LUMP51884 338 aaPredicted RBP9.42□□□□□ -0.9
LIG1-217ENST00000599165 MRPS15P82914 257 aaKnown RBP9.42□□□□□ -0.9
LIG1-217ENST00000599165 RUNX1Q01196 453 aa9.42□□□□□ -0.9
LIG1-217ENST00000599165 PJVKQ0ZLH3 352 aa9.42□□□□□ -0.9
LIG1-217ENST00000599165 EIF4EBP1Q13541 118 aaPredicted RBP9.42□□□□□ -0.9
LIG1-217ENST00000599165 ZNF562Q6V9R5 426 aa9.42□□□□□ -0.9
LIG1-217ENST00000599165 ST6GALNAC5Q9BVH7 336 aa9.42□□□□□ -0.9
LIG1-217ENST00000599165 ALX4Q9H161 411 aaPredicted RBP9.42□□□□□ -0.9
LIG1-217ENST00000599165 SORL1Q92673 2214 aa9.41□□□□□ -0.9
LIG1-217ENST00000599165 A0A1W2PN81 502 aa9.41□□□□□ -0.9
LIG1-217ENST00000599165 TUSC2O75896 110 aa9.41□□□□□ -0.9
LIG1-217ENST00000599165 APOA2P02652 100 aa9.41□□□□□ -0.9
LIG1-217ENST00000599165 PTHLHP12272 177 aa9.41□□□□□ -0.9
LIG1-217ENST00000599165 NFYAP23511 347 aaPredicted RBP9.41□□□□□ -0.9
LIG1-217ENST00000599165 CHRNA7P36544 502 aa9.41□□□□□ -0.9
LIG1-217ENST00000599165 TALDO1P37837 337 aa9.41□□□□□ -0.9
LIG1-217ENST00000599165 SCAND1P57086 179 aa9.41□□□□□ -0.9
LIG1-217ENST00000599165 RPS16P62249 146 aaKnown RBP9.41□□□□□ -0.9
LIG1-217ENST00000599165 ARL6IP1Q15041 203 aa9.41□□□□□ -0.9
LIG1-217ENST00000599165 TMEM177Q53S58 311 aa9.41□□□□□ -0.9
LIG1-217ENST00000599165 IDNKQ5T6J7 187 aa9.41□□□□□ -0.9
LIG1-217ENST00000599165 BVESQ8NE79 360 aa9.41□□□□□ -0.9
LIG1-217ENST00000599165 OR11H1Q8NG94 326 aa9.41□□□□□ -0.9
LIG1-217ENST00000599165 FLYWCH2Q96CP2 140 aaKnown RBP9.41□□□□□ -0.9
LIG1-217ENST00000599165 OR5B12Q96R08 314 aa9.41□□□□□ -0.9
LIG1-217ENST00000599165 DCSTAMPQ9H295 470 aa9.41□□□□□ -0.9
LIG1-217ENST00000599165 SCOCQ9UIL1 159 aa9.41□□□□□ -0.9
LIG1-217ENST00000599165 FOXA2Q9Y261 457 aaPredicted RBP9.41□□□□□ -0.9
LIG1-217ENST00000599165 ETV7Q9Y603 341 aa9.41□□□□□ -0.9
LIG1-217ENST00000599165 A3GALT2U3KPV4 340 aa9.41□□□□□ -0.9
LIG1-217ENST00000599165 J3QRK9 145 aa9.4□□□□□ -0.9
LIG1-217ENST00000599165 HLA-DQB1P01920 261 aa9.4□□□□□ -0.9
LIG1-217ENST00000599165 RPS19P39019 145 aaKnown RBP9.4□□□□□ -0.9
LIG1-217ENST00000599165 BRWD1-AS2P59051 145 aa9.4□□□□□ -0.9
LIG1-217ENST00000599165 RPL30P62888 115 aaKnown RBP9.4□□□□□ -0.9
LIG1-217ENST00000599165 PLGLAQ15195 96 aa9.4□□□□□ -0.9
LIG1-217ENST00000599165 AKIRIN2Q53H80 203 aa9.4□□□□□ -0.9
LIG1-217ENST00000599165 PPP1R27Q86WC6 154 aa9.4□□□□□ -0.9
LIG1-217ENST00000599165 GVQW1Q8N7I0 195 aa9.4□□□□□ -0.9
LIG1-217ENST00000599165 LFNGQ8NES3 379 aa9.4□□□□□ -0.9
LIG1-217ENST00000599165 TSPAN14Q8NG11 270 aa9.4□□□□□ -0.9
LIG1-217ENST00000599165 ARPC1AQ92747 370 aa9.4□□□□□ -0.9
LIG1-217ENST00000599165 TSNAXQ99598 290 aaKnown RBP9.4□□□□□ -0.9
LIG1-217ENST00000599165 GINS4Q9BRT9 223 aa9.4□□□□□ -0.9
LIG1-217ENST00000599165 ANXA10Q9UJ72 324 aa9.4□□□□□ -0.9
LIG1-217ENST00000599165 VSIG4Q9Y279 399 aa9.4□□□□□ -0.9
LIG1-217ENST00000599165 OR2W1Q9Y3N9 320 aa9.4□□□□□ -0.9
LIG1-217ENST00000599165 COL7A1Q02388 2944 aa9.4□□□□□ -0.9
LIG1-217ENST00000599165 TRAV18A0A075B6X5 111 aa9.39□□□□□ -0.91
LIG1-217ENST00000599165 SCGNO76038 276 aa9.39□□□□□ -0.91
LIG1-217ENST00000599165 RAB25P57735 213 aa9.39□□□□□ -0.91
LIG1-217ENST00000599165 GNG2P59768 71 aa9.39□□□□□ -0.91
LIG1-217ENST00000599165 PITPNAQ00169 270 aa9.39□□□□□ -0.91
LIG1-217ENST00000599165 FXYD3Q14802 87 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms