RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 LHX4Q969G2 390 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 FAM212BQ9NTI7 297 aaPredicted RBP8.34□□□□□ -1.07
LIG3-216ENST00000593099 SLC39A9Q9NUM3 307 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 TMEM14DPA8MWL7 114 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 CD200P41217 278 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 ZNF672Q499Z4 452 aaPredicted RBP8.33□□□□□ -1.08
LIG3-216ENST00000593099 LRP11Q86VZ4 500 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 C7orf69Q9H7B7 122 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 DOK5Q9P104 306 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 CACNG5Q9UF02 275 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 OPN4Q9UHM6 478 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 CACNA1DQ01668 2161 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 LYNX1G3V0Z9 82 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 LYNX1P0DP58 116 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 S100A11P31949 105 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 PPP1R1AQ13522 171 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 MOGAT2Q3SYC2 334 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 Q56UQ5 140 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 ZNF787Q6DD87 383 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 RGP1Q92546 391 aaPredicted RBP8.33□□□□□ -1.08
LIG3-216ENST00000593099 Q9N2K0 584 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 JPT1Q9UK76 154 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 PQLC2LA1A4F0 135 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 H7BYZ3 331 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 DVL1O14640 695 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 DDTP30046 118 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 GZMKP49863 264 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 P2RY4P51582 365 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 PNKDQ8N490 385 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 PAQR4Q8N4S7 273 aaPredicted RBP8.33□□□□□ -1.08
LIG3-216ENST00000593099 ACY3Q96HD9 319 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 GHITMQ9H3K2 345 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 KCNK7Q9Y2U2 307 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 ARL2-SNX15V9GYD0 113 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 KIAA1549LQ6ZVL6 1849 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 DKK1O94907 266 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 OR5G3P0C626 314 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 PSG2P11465 335 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 RCC1P18754 421 aaPredicted RBP8.33□□□□□ -1.08
LIG3-216ENST00000593099 CCL1P22362 96 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 F2RP25116 425 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 UQCRFS1P47985 274 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 DHRS2Q13268 280 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 ZNF260Q3ZCT1 412 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 OR52B4Q8NGK2 314 aa8.33□□□□□ -1.08
LIG3-216ENST00000593099 PLXNB3Q9ULL4 1909 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 OR5H14A6NHG9 310 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 SCTP09683 121 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 PGA5P0DJD9 388 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 HIST1H3AP68431 136 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 MEF2CQ06413 473 aaPredicted RBP8.32□□□□□ -1.08
LIG3-216ENST00000593099 Q6ZN92 141 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 MISP3Q96FF7 219 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 OR51I2Q9H344 312 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 ELOA3CA0A087WX78 387 aaPredicted RBP8.32□□□□□ -1.08
LIG3-216ENST00000593099 IGKV3-15P01624 115 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 OPN1MWP04001 364 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 OPN1MW2P0DN77 364 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 OPN1MW3P0DN78 364 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 GLDNQ6ZMI3 551 aaPredicted RBP8.32□□□□□ -1.08
LIG3-216ENST00000593099 IL34Q6ZMJ4 242 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 NEURL2Q9BR09 285 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 COA4Q9NYJ1 87 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 MTCH1Q9NZJ7 389 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 PRNDQ9UKY0 176 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 H3BP45 60 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 HBE1P02100 147 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 MT-ND4LP03901 98 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 RAG2P55895 527 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 ACSM6Q6P461 480 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 FOXL2NBQ6ZUU3 175 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 C20orf24Q9BUV8 137 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 PRORYQ9H606 182 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 RAB18Q9NP72 206 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 ZNF319Q9P2F9 582 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 AUP1Q9Y679 476 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 RAB5AP20339 215 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 REC114Q7Z4M0 266 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 KCNRGQ8N5I3 272 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 NUDT10Q8NFP7 164 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 ABHD14BQ96IU4 210 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 RAB40CQ96S21 281 aa8.32□□□□□ -1.08
LIG3-216ENST00000593099 CADP27708 2225 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 IGHV3OR16-10A0A075B7F0 116 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 C9orf170A2RU37 121 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 A6NNC1 897 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 J3KRW8 73 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 DUS4LO95620 317 aaKnown RBP8.31□□□□□ -1.08
LIG3-216ENST00000593099 VDAC1P21796 283 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 RPL12P30050 165 aaKnown RBP8.31□□□□□ -1.08
LIG3-216ENST00000593099 OPRK1P41145 380 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 PCSK4Q6UW60 755 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 WDR82Q6UXN9 313 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 C1QL2Q7Z5L3 287 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 CMTM2Q8TAZ6 248 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 UHRF2Q96PU4 802 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 DENND4AQ7Z401 1863 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 GTF3C1Q12789 2109 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 IGHV3-72A0A0B4J1Y9 119 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 SMLR1H3BR10 107 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms