RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 SOSTQ9BQB4 213 aa5.29□□□□□ -1.56
VPS53-213ENST00000572334 THAP7Q9BT49 309 aaPredicted RBP5.29□□□□□ -1.56
VPS53-213ENST00000572334 ALG8Q9BVK2 526 aa5.29□□□□□ -1.56
VPS53-213ENST00000572334 MIXL1Q9H2W2 232 aa5.29□□□□□ -1.56
VPS53-213ENST00000572334 ZFP57Q9NU63 452 aa5.29□□□□□ -1.56
VPS53-213ENST00000572334 IDI2-AS1Q9NZ38 188 aa5.29□□□□□ -1.56
VPS53-213ENST00000572334 OR6C3Q9NZP0 311 aa5.29□□□□□ -1.56
VPS53-213ENST00000572334 DMRT1Q9Y5R6 373 aa5.29□□□□□ -1.56
VPS53-213ENST00000572334 A0A1W2PP11 408 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 TMEM218A2RU14 115 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 M0QZK8 103 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 CTDSPLO15194 276 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 FGF16O43320 207 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 ATG12O94817 140 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 DUS4LO95620 317 aaKnown RBP5.28□□□□□ -1.56
VPS53-213ENST00000572334 IGKV1D-33P01593 117 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 IGKV1-33P01594 117 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 TCRBP04435 133 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 IL5P05113 134 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 HCKP08631 526 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 FAM106CPP0CH98 169 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 LIMS3P0CW19 117 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 LIMS4P0CW20 117 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 TMEM225BP0DP42 221 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 GLP1RP43220 463 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 TAS2R43P59537 309 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 CFHR3Q02985 330 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 ZNF816Q0VGE8 651 aaPredicted RBP5.28□□□□□ -1.56
VPS53-213ENST00000572334 GPR176Q14439 515 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 HNF4GQ14541 408 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 IL13RA2Q14627 380 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 SMN1Q16637 294 aaKnown RBP5.28□□□□□ -1.56
VPS53-213ENST00000572334 LTC4SQ16873 150 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 PAN3Q58A45 887 aaKnown RBP5.28□□□□□ -1.56
VPS53-213ENST00000572334 KHDC1LQ5JSQ8 128 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 EIF5AL1Q6IS14 154 aaKnown RBP5.28□□□□□ -1.56
VPS53-213ENST00000572334 CCDC144NLQ6NUI1 221 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 GSG1LQ6UXU4 331 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 LCNL1Q6ZST4 164 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 SERPINA12Q8IW75 414 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 SYS1Q8N2H4 156 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 TMEM104Q8NE00 496 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 BEST4Q8NFU0 473 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 OR52I1Q8NGK6 324 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 MRGPRDQ8TDS7 321 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 GLYATL2Q8WU03 294 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 TOMM40LQ969M1 308 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 ST6GALNAC6Q969X2 333 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 RPEQ96AT9 228 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 MRPL48Q96GC5 212 aaKnown RBP5.28□□□□□ -1.56
VPS53-213ENST00000572334 RAX2Q96IS3 184 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 DUX3Q96PT4 197 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 B9D2Q9BPU9 175 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 TMPRSS5Q9H3S3 457 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 AMBNQ9NP70 447 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 MRPS18AQ9NVS2 196 aaKnown RBP5.28□□□□□ -1.56
VPS53-213ENST00000572334 TAS2R4Q9NYW5 299 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 COMMD3Q9UBI1 195 aa5.28□□□□□ -1.56
VPS53-213ENST00000572334 SIRT4Q9Y6E7 314 aaPredicted RBP5.28□□□□□ -1.56
VPS53-213ENST00000572334 IGHV3-72A0A0B4J1Y9 119 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 A0A0B4J293 547 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 IGHV1-3A0A0C4DH29 117 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 KANTRA0A1W2PQU2 76 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 TMEM212A6NML5 194 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 ZNF736B4DX44 427 aaPredicted RBP5.27□□□□□ -1.57
VPS53-213ENST00000572334 DNASE2O00115 360 aaPredicted RBP5.27□□□□□ -1.57
VPS53-213ENST00000572334 SLC31A2O15432 143 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 RLN2P04090 185 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 CLEC2LP0C7M8 214 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 MGMTP16455 207 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 TMEM11P17152 192 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 MYCNOSP40205 109 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 GNG10P50151 68 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 RAB7AP51149 207 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 MADCAM1Q13477 382 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 DOC2BQ14184 412 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 SSX1Q16384 188 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 DEFB121Q5J5C9 76 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 LPCAT3Q6P1A2 487 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 CD200R1LQ6Q8B3 271 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 SSX9Q7RTT3 188 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 IZUMO1Q8IYV9 350 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 LINC00311Q8N616 119 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 C15orf54Q8N8G6 183 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 RNF152Q8N8N0 203 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 ZNF565Q8N9K5 539 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 Q8N9W7 124 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 SUMF2Q8NBJ7 301 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 ZNF439Q8NDP4 499 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 OR10A7Q8NGE5 316 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 OR5D14Q8NGL3 314 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 OR5AK2Q8NH90 309 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 UBALD1Q8TB05 177 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 THAP6Q8TBB0 222 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 CCDC107Q8WV48 283 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 TNFAIP8L1Q8WVP5 186 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 EAF1Q96JC9 268 aaPredicted RBP5.27□□□□□ -1.57
VPS53-213ENST00000572334 JAM3Q9BX67 310 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 BARHL1Q9BZE3 327 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 ALX4Q9H161 411 aaPredicted RBP5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms