RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 G3V318 75 aa15.77■□□□□ 0.12
NUP88-204ENST00000572290 SPDEFO95238 335 aa15.77■□□□□ 0.12
NUP88-204ENST00000572290 IGLL1P15814 213 aa15.77■□□□□ 0.12
NUP88-204ENST00000572290 PPIFP30405 207 aaKnown RBP15.77■□□□□ 0.12
NUP88-204ENST00000572290 MYCNOSP40205 109 aa15.77■□□□□ 0.12
NUP88-204ENST00000572290 THBS3P49746 956 aa15.77■□□□□ 0.12
NUP88-204ENST00000572290 CX3CL1P78423 397 aa15.77■□□□□ 0.12
NUP88-204ENST00000572290 CNIH2Q6PI25 160 aa15.77■□□□□ 0.12
NUP88-204ENST00000572290 LINC00482Q8N8I6 264 aa15.77■□□□□ 0.12
NUP88-204ENST00000572290 C5orf30Q96GV9 206 aa15.77■□□□□ 0.12
NUP88-204ENST00000572290 ANXA10Q9UJ72 324 aa15.77■□□□□ 0.12
NUP88-204ENST00000572290 TRAV41A0A0B4J266 112 aa15.76■□□□□ 0.11
NUP88-204ENST00000572290 FCN1O00602 326 aa15.76■□□□□ 0.11
NUP88-204ENST00000572290 PSMB8P28062 276 aa15.76■□□□□ 0.11
NUP88-204ENST00000572290 CDX1P47902 265 aaPredicted RBP15.76■□□□□ 0.11
NUP88-204ENST00000572290 NDPQ00604 133 aa15.76■□□□□ 0.11
NUP88-204ENST00000572290 TAGLNQ01995 201 aaKnown RBP15.76■□□□□ 0.11
NUP88-204ENST00000572290 MRPL41Q8IXM3 137 aaKnown RBP15.76■□□□□ 0.11
NUP88-204ENST00000572290 CLCC1Q96S66 551 aa15.76■□□□□ 0.11
NUP88-204ENST00000572290 FUNDC2Q9BWH2 189 aa15.76■□□□□ 0.11
NUP88-204ENST00000572290 J3QRK9 145 aa15.75■□□□□ 0.11
NUP88-204ENST00000572290 NFYAP23511 347 aaPredicted RBP15.75■□□□□ 0.11
NUP88-204ENST00000572290 CBX3Q13185 183 aa15.75■□□□□ 0.11
NUP88-204ENST00000572290 RCC1LQ96I51 464 aaKnown RBP15.75■□□□□ 0.11
NUP88-204ENST00000572290 AUNIPQ9H7T9 357 aa15.75■□□□□ 0.11
NUP88-204ENST00000572290 FBXO7Q9Y3I1 522 aa15.75■□□□□ 0.11
NUP88-204ENST00000572290 OR2W1Q9Y3N9 320 aa15.75■□□□□ 0.11
NUP88-204ENST00000572290 DUS4LO95620 317 aaKnown RBP15.74■□□□□ 0.11
NUP88-204ENST00000572290 LGALS7P47929 136 aa15.74■□□□□ 0.11
NUP88-204ENST00000572290 LUMP51884 338 aaPredicted RBP15.74■□□□□ 0.11
NUP88-204ENST00000572290 CRIP2P52943 208 aaPredicted RBP15.74■□□□□ 0.11
NUP88-204ENST00000572290 ECSCRQ19T08 205 aa15.74■□□□□ 0.11
NUP88-204ENST00000572290 TMEM65Q6PI78 240 aa15.74■□□□□ 0.11
NUP88-204ENST00000572290 BVESQ8NE79 360 aa15.74■□□□□ 0.11
NUP88-204ENST00000572290 OR13F1Q8NGS4 319 aa15.74■□□□□ 0.11
NUP88-204ENST00000572290 ABHD5Q8WTS1 349 aa15.74■□□□□ 0.11
NUP88-204ENST00000572290 S100A16Q96FQ6 103 aaKnown RBP15.74■□□□□ 0.11
NUP88-204ENST00000572290 ADTRPQ96IZ2 230 aa15.74■□□□□ 0.11
NUP88-204ENST00000572290 P2RX4Q99571 388 aa15.74■□□□□ 0.11
NUP88-204ENST00000572290 SLC25A17O43808 307 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 CA2P00918 260 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 IGLV1-40P01703 118 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 HLA-DQB1P01920 261 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 RRASP10301 218 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 DUTP33316 252 aaKnown RBP15.73■□□□□ 0.11
NUP88-204ENST00000572290 NCS1P62166 190 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 RTL8BQ17RB0 113 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 UBE2NLQ5JXB2 153 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 ZNF562Q6V9R5 426 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 HOGA1Q86XE5 327 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 ZNF645Q8N7E2 425 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 GVQW1Q8N7I0 195 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 MINDY2Q8NBR6 621 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 BEST4Q8NFU0 473 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 MYOZ3Q8TDC0 251 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 SLC25A46Q96AG3 418 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 RAX2Q96IS3 184 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 HARBI1Q96MB7 349 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 DUX3Q96PT4 197 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 KLK15Q9H2R5 256 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 A3GALT2U3KPV4 340 aa15.73■□□□□ 0.11
NUP88-204ENST00000572290 CCL24O00175 119 aa15.72■□□□□ 0.11
NUP88-204ENST00000572290 XRCC3O43542 346 aa15.72■□□□□ 0.11
NUP88-204ENST00000572290 SLC22A5O76082 557 aa15.72■□□□□ 0.11
NUP88-204ENST00000572290 PRB2P02812 416 aaPredicted RBP15.72■□□□□ 0.11
NUP88-204ENST00000572290 SMIM18P0DKX4 95 aa15.72■□□□□ 0.11
NUP88-204ENST00000572290 EGR2P11161 476 aaPredicted RBP15.72■□□□□ 0.11
NUP88-204ENST00000572290 ARPC4P59998 168 aa15.72■□□□□ 0.11
NUP88-204ENST00000572290 TMEM267Q0VDI3 215 aaPredicted RBP15.72■□□□□ 0.11
NUP88-204ENST00000572290 TMEM177Q53S58 311 aa15.72■□□□□ 0.11
NUP88-204ENST00000572290 FOXB2Q5VYV0 432 aa15.72■□□□□ 0.11
NUP88-204ENST00000572290 TCTEX1D1Q8N7M0 179 aa15.72■□□□□ 0.11
NUP88-204ENST00000572290 SAMD12Q8N8I0 201 aa15.72■□□□□ 0.11
NUP88-204ENST00000572290 DDB2Q92466 427 aa15.72■□□□□ 0.11
NUP88-204ENST00000572290 TPSG1Q9NRR2 321 aa15.72■□□□□ 0.11
NUP88-204ENST00000572290 NECAP2Q9NVZ3 263 aa15.72■□□□□ 0.11
NUP88-204ENST00000572290 NUBP2Q9Y5Y2 271 aa15.72■□□□□ 0.11
NUP88-204ENST00000572290 NOTCH1P46531 2555 aa15.72■□□□□ 0.11
NUP88-204ENST00000572290 A0A1W2PN81 502 aa15.71■□□□□ 0.11
NUP88-204ENST00000572290 LINC00473A8K010 186 aa15.71■□□□□ 0.11
NUP88-204ENST00000572290 SHOXO15266 292 aa15.71■□□□□ 0.11
NUP88-204ENST00000572290 IGLV2-23P01705 113 aa15.71■□□□□ 0.11
NUP88-204ENST00000572290 PTHLHP12272 177 aa15.71■□□□□ 0.11
NUP88-204ENST00000572290 CHRNA7P36544 502 aa15.71■□□□□ 0.11
NUP88-204ENST00000572290 CBX5P45973 191 aa15.71■□□□□ 0.11
NUP88-204ENST00000572290 VBP1P61758 197 aa15.71■□□□□ 0.11
NUP88-204ENST00000572290 DEFB136Q30KP8 78 aa15.71■□□□□ 0.11
NUP88-204ENST00000572290 C19orf54Q5BKX5 351 aa15.71■□□□□ 0.11
NUP88-204ENST00000572290 REC114Q7Z4M0 266 aa15.71■□□□□ 0.11
NUP88-204ENST00000572290 PPP1R27Q86WC6 154 aa15.71■□□□□ 0.11
NUP88-204ENST00000572290 C4orf3Q8WVX3 66 aa15.71■□□□□ 0.11
NUP88-204ENST00000572290 KCTD12Q96CX2 325 aaKnown RBP15.71■□□□□ 0.11
NUP88-204ENST00000572290 UBE2E2Q96LR5 201 aa15.71■□□□□ 0.11
NUP88-204ENST00000572290 FAM103A1Q9BTL3 118 aaKnown RBP15.71■□□□□ 0.11
NUP88-204ENST00000572290 FOXA2Q9Y261 457 aaPredicted RBP15.71■□□□□ 0.11
NUP88-204ENST00000572290 IGKV1D-13A0A0B4J2D9 117 aa15.7■□□□□ 0.1
NUP88-204ENST00000572290 TUSC2O75896 110 aa15.7■□□□□ 0.1
NUP88-204ENST00000572290 IGKV1-13P0DP09 117 aa15.7■□□□□ 0.1
NUP88-204ENST00000572290 RAB9AP51151 201 aa15.7■□□□□ 0.1
NUP88-204ENST00000572290 KIAA0141Q14154 515 aaPredicted RBP15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms