RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 FABP1P07148 127 aa19■□□□□ 0.63
VPS53-211ENST00000571805 TAAR6Q96RI8 345 aa19■□□□□ 0.63
VPS53-211ENST00000571805 IGHV2OR16-5A0A0B4J2B6 119 aa19■□□□□ 0.63
VPS53-211ENST00000571805 WT1P19544 449 aaPredicted RBP19■□□□□ 0.63
VPS53-211ENST00000571805 MBNL2Q5VZF2 373 aaKnown RBP19■□□□□ 0.63
VPS53-211ENST00000571805 H2BFWTQ7Z2G1 175 aa19■□□□□ 0.63
VPS53-211ENST00000571805 DCTN5Q9BTE1 182 aa19■□□□□ 0.63
VPS53-211ENST00000571805 IGHV1-18A0A0C4DH31 117 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 DEFB108AA8MXU0 73 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 CLDN34H7C241 214 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 ST8SIA5O15466 376 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 HIST1H2BKO60814 126 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 HIST1H2BJP06899 126 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 HIST1H2BOP23527 126 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 HIST1H2BBP33778 126 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 CDX1P47902 265 aaPredicted RBP18.99■□□□□ 0.63
VPS53-211ENST00000571805 NDUFA6P56556 154 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 HIST1H2BDP58876 126 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 HIST1H2BCP62807 126 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 PAX5Q02548 391 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 HIST2H2BEQ16778 126 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 HIST2H2BFQ5QNW6 126 aaPredicted RBP18.99■□□□□ 0.63
VPS53-211ENST00000571805 OR10P1Q8NGE3 313 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 HIST1H2BHQ93079 126 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 HSD17B10Q99714 261 aaKnown RBP18.99■□□□□ 0.63
VPS53-211ENST00000571805 HIST1H2BNQ99877 126 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 HIST1H2BMQ99879 126 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 PSG11Q9UQ72 335 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 GCH1P30793 250 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 VWC2Q2TAL6 325 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 Q3ZCU0 254 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 OR13D1Q8NGV5 346 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 SARAFQ96BY9 339 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 LAMP3Q9UQV4 416 aa18.99■□□□□ 0.63
VPS53-211ENST00000571805 TRGC2P03986 189 aa18.98■□□□□ 0.63
VPS53-211ENST00000571805 HTD2P86397 168 aa18.98■□□□□ 0.63
VPS53-211ENST00000571805 MEF2BQ02080 365 aaPredicted RBP18.98■□□□□ 0.63
VPS53-211ENST00000571805 LRRC29Q8WV35 223 aa18.98■□□□□ 0.63
VPS53-211ENST00000571805 CIB3Q96Q77 187 aaPredicted RBP18.98■□□□□ 0.63
VPS53-211ENST00000571805 TRAV17A0A0B4J275 112 aa18.98■□□□□ 0.63
VPS53-211ENST00000571805 TNFSF13O75888 250 aa18.98■□□□□ 0.63
VPS53-211ENST00000571805 MDKP21741 143 aaPredicted RBP18.98■□□□□ 0.63
VPS53-211ENST00000571805 FGF7P21781 194 aa18.98■□□□□ 0.63
VPS53-211ENST00000571805 RPS16P62249 146 aaKnown RBP18.98■□□□□ 0.63
VPS53-211ENST00000571805 TFF3Q07654 80 aa18.98■□□□□ 0.63
VPS53-211ENST00000571805 PIP4P1Q86T03 277 aa18.98■□□□□ 0.63
VPS53-211ENST00000571805 FAM210BQ96KR6 192 aa18.98■□□□□ 0.63
VPS53-211ENST00000571805 ZNF71Q9NQZ8 489 aaPredicted RBP18.98■□□□□ 0.63
VPS53-211ENST00000571805 CTXND1A0A1B0GTU2 59 aa18.97■□□□□ 0.63
VPS53-211ENST00000571805 LINC00587B1AMM8 73 aa18.97■□□□□ 0.63
VPS53-211ENST00000571805 PROP1O75360 226 aa18.97■□□□□ 0.63
VPS53-211ENST00000571805 PRDX2P32119 198 aa18.97■□□□□ 0.63
VPS53-211ENST00000571805 OR10G9Q8NGN4 311 aa18.97■□□□□ 0.63
VPS53-211ENST00000571805 OR10G7Q8NGN6 311 aa18.97■□□□□ 0.63
VPS53-211ENST00000571805 SSX3Q99909 188 aa18.97■□□□□ 0.63
VPS53-211ENST00000571805 OR51M1Q9H341 326 aa18.97■□□□□ 0.63
VPS53-211ENST00000571805 SLC25A22Q9H936 323 aa18.97■□□□□ 0.63
VPS53-211ENST00000571805 DKK4Q9UBT3 224 aa18.97■□□□□ 0.63
VPS53-211ENST00000571805 ZFHX4Q86UP3 3567 aa18.97■□□□□ 0.63
VPS53-211ENST00000571805 INTS1Q8N201 2190 aaKnown RBP18.97■□□□□ 0.63
VPS53-211ENST00000571805 HMGB3O15347 200 aaKnown RBP18.97■□□□□ 0.63
VPS53-211ENST00000571805 MBP02144 154 aa18.97■□□□□ 0.63
VPS53-211ENST00000571805 SPINK9Q5DT21 86 aa18.97■□□□□ 0.63
VPS53-211ENST00000571805 SPNS3Q6ZMD2 512 aa18.97■□□□□ 0.63
VPS53-211ENST00000571805 C1orf87Q8N0U7 546 aa18.97■□□□□ 0.63
VPS53-211ENST00000571805 OPN3Q9H1Y3 402 aaPredicted RBP18.97■□□□□ 0.63
VPS53-211ENST00000571805 ASCL3Q9NQ33 180 aa18.97■□□□□ 0.63
VPS53-211ENST00000571805 MARCH11A6NNE9 402 aa18.96■□□□□ 0.63
VPS53-211ENST00000571805 SPINT2O43291 252 aa18.96■□□□□ 0.63
VPS53-211ENST00000571805 ADH4P08319 380 aa18.96■□□□□ 0.63
VPS53-211ENST00000571805 GNB2P62879 340 aa18.96■□□□□ 0.63
VPS53-211ENST00000571805 NCR3LG1Q68D85 454 aa18.96■□□□□ 0.63
VPS53-211ENST00000571805 STARD4Q96DR4 205 aa18.96■□□□□ 0.63
VPS53-211ENST00000571805 NPCDR1Q9BY65 106 aa18.96■□□□□ 0.63
VPS53-211ENST00000571805 CGAP01215 116 aa18.96■□□□□ 0.63
VPS53-211ENST00000571805 EGR1P18146 543 aa18.96■□□□□ 0.63
VPS53-211ENST00000571805 FFAR4Q5NUL3 377 aa18.96■□□□□ 0.63
VPS53-211ENST00000571805 TRAT1Q6PIZ9 186 aa18.96■□□□□ 0.63
VPS53-211ENST00000571805 CTDSP1Q9GZU7 261 aa18.96■□□□□ 0.63
VPS53-211ENST00000571805 HEATR1Q9H583 2144 aaKnown RBP18.96■□□□□ 0.63
VPS53-211ENST00000571805 MIOXQ9UGB7 285 aa18.96■□□□□ 0.63
VPS53-211ENST00000571805 NAT8Q9UHE5 227 aa18.96■□□□□ 0.63
VPS53-211ENST00000571805 ABHD5Q8WTS1 349 aa18.95■□□□□ 0.62
VPS53-211ENST00000571805 SMIM7Q9BQ49 75 aa18.95■□□□□ 0.62
VPS53-211ENST00000571805 TRBV24-1A0A075B6N3 115 aa18.95■□□□□ 0.62
VPS53-211ENST00000571805 IGKV1D-17A0A075B6S4 117 aa18.95■□□□□ 0.62
VPS53-211ENST00000571805 DUTP33316 252 aaKnown RBP18.95■□□□□ 0.62
VPS53-211ENST00000571805 EDDM3AQ14507 147 aa18.95■□□□□ 0.62
VPS53-211ENST00000571805 MSMPQ1L6U9 139 aa18.95■□□□□ 0.62
VPS53-211ENST00000571805 CYP2G1PQ6ZSU1 146 aa18.95■□□□□ 0.62
VPS53-211ENST00000571805 GGACTQ9BVM4 153 aa18.95■□□□□ 0.62
VPS53-211ENST00000571805 QTRT1Q9BXR0 403 aaKnown RBP18.95■□□□□ 0.62
VPS53-211ENST00000571805 WASF3Q9UPY6 502 aa18.95■□□□□ 0.62
VPS53-211ENST00000571805 RBMXL2O75526 392 aaKnown RBP18.94■□□□□ 0.62
VPS53-211ENST00000571805 PSMB3P49720 205 aa18.94■□□□□ 0.62
VPS53-211ENST00000571805 LTC4SQ16873 150 aa18.94■□□□□ 0.62
VPS53-211ENST00000571805 OR2Z1Q8NG97 314 aa18.94■□□□□ 0.62
VPS53-211ENST00000571805 GATAD1Q8WUU5 269 aa18.94■□□□□ 0.62
VPS53-211ENST00000571805 R3HDM4Q96D70 268 aa18.94■□□□□ 0.62
VPS53-211ENST00000571805 C15orf62A8K5M9 175 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms