RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 DUTP33316 252 aaKnown RBP6.81□□□□□ -1.32
SF3B3-212ENST00000568539 LINC00205P59089 165 aa6.81□□□□□ -1.32
SF3B3-212ENST00000568539 RND3P61587 244 aa6.81□□□□□ -1.32
SF3B3-212ENST00000568539 HABP2Q14520 560 aaPredicted RBP6.81□□□□□ -1.32
SF3B3-212ENST00000568539 RBMS2Q15434 407 aaKnown RBP6.81□□□□□ -1.32
SF3B3-212ENST00000568539 DEFB112Q30KQ8 113 aa6.81□□□□□ -1.32
SF3B3-212ENST00000568539 LCE2AQ5TA79 106 aaPredicted RBP6.81□□□□□ -1.32
SF3B3-212ENST00000568539 CCDC144NLQ6NUI1 221 aa6.81□□□□□ -1.32
SF3B3-212ENST00000568539 NRARPQ7Z6K4 114 aa6.81□□□□□ -1.32
SF3B3-212ENST00000568539 CMTM1Q8IZ96 169 aa6.81□□□□□ -1.32
SF3B3-212ENST00000568539 OR8H3Q8N146 312 aa6.81□□□□□ -1.32
SF3B3-212ENST00000568539 ZDHHC22Q8N966 263 aa6.81□□□□□ -1.32
SF3B3-212ENST00000568539 DRAXINQ8NBI3 349 aaPredicted RBP6.81□□□□□ -1.32
SF3B3-212ENST00000568539 ZFAND1Q8TCF1 268 aa6.81□□□□□ -1.32
SF3B3-212ENST00000568539 CFHR4Q92496 578 aa6.81□□□□□ -1.32
SF3B3-212ENST00000568539 ZNF486Q96H40 463 aaPredicted RBP6.81□□□□□ -1.32
SF3B3-212ENST00000568539 ZNF48Q96MX3 618 aaPredicted RBP6.81□□□□□ -1.32
SF3B3-212ENST00000568539 GPHA2Q96T91 129 aa6.81□□□□□ -1.32
SF3B3-212ENST00000568539 HSD17B10Q99714 261 aaKnown RBP6.81□□□□□ -1.32
SF3B3-212ENST00000568539 NABP2Q9BQ15 211 aa6.81□□□□□ -1.32
SF3B3-212ENST00000568539 RTBDNQ9BSG5 229 aaPredicted RBP6.81□□□□□ -1.32
SF3B3-212ENST00000568539 MRPL20Q9BYC9 149 aaKnown RBP6.81□□□□□ -1.32
SF3B3-212ENST00000568539 MEGF9Q9H1U4 602 aa6.81□□□□□ -1.32
SF3B3-212ENST00000568539 DPAGT1Q9H3H5 408 aa6.81□□□□□ -1.32
SF3B3-212ENST00000568539 PRDM13Q9H4Q3 707 aa6.81□□□□□ -1.32
SF3B3-212ENST00000568539 C5orf66Q9H5L9 145 aa6.81□□□□□ -1.32
SF3B3-212ENST00000568539 SLC2A9Q9NRM0 540 aa6.81□□□□□ -1.32
SF3B3-212ENST00000568539 VSIG4Q9Y279 399 aa6.81□□□□□ -1.32
SF3B3-212ENST00000568539 FAM96BQ9Y3D0 163 aa6.81□□□□□ -1.32
SF3B3-212ENST00000568539 FN1P02751 2386 aaKnown RBP6.8□□□□□ -1.32
SF3B3-212ENST00000568539 JMJD1CQ15652 2540 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 FAM240BA0A1B0GVZ2 78 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 LINC00473A8K010 186 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 COL6A5A8TX70 2615 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 TIMM23O14925 209 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 TNFSF12O43508 249 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 CRLF1O75462 422 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 TCRBP04435 133 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 SRD5A1P18405 259 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 THBS3P49746 956 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 DYNLT3P51808 116 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 PIGPP57054 158 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 RPL30P62888 115 aaKnown RBP6.8□□□□□ -1.32
SF3B3-212ENST00000568539 ABCA11PQ4W5N1 156 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 PHLDA2Q53GA4 152 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 GLDNQ6ZMI3 551 aaPredicted RBP6.8□□□□□ -1.32
SF3B3-212ENST00000568539 ZNF66Q6ZN08 573 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 MOB3BQ86TA1 216 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 ZNF383Q8NA42 475 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 DUSP18Q8NEJ0 188 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 OR5AN1Q8NGI8 311 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 PIFOQ8TCI5 191 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 DDB2Q92466 427 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 ADTRPQ96IZ2 230 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 SCGB3A2Q96PL1 93 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 COPZ2Q9P299 210 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 FLVCR2Q9UPI3 526 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 C14orf166Q9Y224 244 aaKnown RBP6.8□□□□□ -1.32
SF3B3-212ENST00000568539 ZANQ9Y493 2812 aa6.8□□□□□ -1.32
SF3B3-212ENST00000568539 IGHV3-72A0A0B4J1Y9 119 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 FAM90A9PA6NNJ1 464 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 H0YJW9 148 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 MPPED1O15442 326 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 PTTG1O95997 202 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 RLN1P04808 185 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 F2RP25116 425 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 CD1BP29016 333 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 S100GP29377 79 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 MC5RP33032 325 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 ARHGDIBP52566 201 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 BRWD1-AS2P59051 145 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 SCGB2A2Q13296 93 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 AANATQ16613 207 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 Q6YL49 198 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 KCTD9Q7L273 389 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 TMED4Q7Z7H5 227 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 TBC1D26Q86UD7 250 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 CENPSQ8N2Z9 138 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 CCDC71LQ8N9Z2 235 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 ADAD2Q8NCV1 583 aaKnown RBP6.79□□□□□ -1.32
SF3B3-212ENST00000568539 OR51H1Q8NH63 302 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 ENKURQ8TC29 256 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 ZFAND2BQ8WV99 257 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 TMEM230Q96A57 120 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 RBMXL1Q96E39 390 aaKnown RBP6.79□□□□□ -1.32
SF3B3-212ENST00000568539 C20orf85Q9H1P6 137 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 NUDT15Q9NV35 164 aa6.79□□□□□ -1.32
SF3B3-212ENST00000568539 CRYM-AS1A6NIL9 109 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 RNF212BA8MTL3 300 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 ARPC1BO15143 372 aaKnown RBP6.78□□□□□ -1.32
SF3B3-212ENST00000568539 VENTXO95231 258 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 FAM157CP0CG43 387 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 SPNP16150 400 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 CD24P25063 80 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 BRS3P32247 399 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 IER3P46695 156 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 RAB13P51153 203 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 MECP2P51608 486 aaKnown RBP6.78□□□□□ -1.32
SF3B3-212ENST00000568539 CATR1Q13166 79 aa6.78□□□□□ -1.32
SF3B3-212ENST00000568539 EBI3Q14213 229 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms