RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 RFX2P48378 723 aa10.93□□□□□ -0.66
CLN3-235ENST00000568497 SCAND1P57086 179 aa10.93□□□□□ -0.66
CLN3-235ENST00000568497 FXYD4P59646 89 aa10.93□□□□□ -0.66
CLN3-235ENST00000568497 ARPC4P59998 168 aa10.93□□□□□ -0.66
CLN3-235ENST00000568497 KRTAP10-11P60412 298 aa10.93□□□□□ -0.66
CLN3-235ENST00000568497 RPL30P62888 115 aaKnown RBP10.93□□□□□ -0.66
CLN3-235ENST00000568497 EBI3Q14213 229 aa10.93□□□□□ -0.66
CLN3-235ENST00000568497 MMDQ15546 238 aa10.93□□□□□ -0.66
CLN3-235ENST00000568497 LY6G6FQ5SQ64 297 aa10.93□□□□□ -0.66
CLN3-235ENST00000568497 CASC10Q5T4H9 136 aa10.93□□□□□ -0.66
CLN3-235ENST00000568497 CROCCP3Q8IVE0 287 aa10.93□□□□□ -0.66
CLN3-235ENST00000568497 DYNC2LI1Q8TCX1 351 aa10.93□□□□□ -0.66
CLN3-235ENST00000568497 PIPOXQ9P0Z9 390 aa10.93□□□□□ -0.66
CLN3-235ENST00000568497 MGAT4AQ9UM21 535 aa10.93□□□□□ -0.66
CLN3-235ENST00000568497 LINC00473A8K010 186 aa10.92□□□□□ -0.66
CLN3-235ENST00000568497 TUSC2O75896 110 aa10.92□□□□□ -0.66
CLN3-235ENST00000568497 IGLV2-14P01704 120 aa10.92□□□□□ -0.66
CLN3-235ENST00000568497 FCGR2CP31995 323 aa10.92□□□□□ -0.66
CLN3-235ENST00000568497 NDPQ00604 133 aa10.92□□□□□ -0.66
CLN3-235ENST00000568497 TAGLNQ01995 201 aaKnown RBP10.92□□□□□ -0.66
CLN3-235ENST00000568497 CNIH2Q6PI25 160 aa10.92□□□□□ -0.66
CLN3-235ENST00000568497 BVESQ8NE79 360 aa10.92□□□□□ -0.66
CLN3-235ENST00000568497 CASTOR1Q8WTX7 329 aa10.92□□□□□ -0.66
CLN3-235ENST00000568497 EDARADDQ8WWZ3 215 aa10.92□□□□□ -0.66
CLN3-235ENST00000568497 KCTD12Q96CX2 325 aaKnown RBP10.92□□□□□ -0.66
CLN3-235ENST00000568497 ABHD1Q96SE0 405 aa10.92□□□□□ -0.66
CLN3-235ENST00000568497 WNT10AQ9GZT5 417 aa10.92□□□□□ -0.66
CLN3-235ENST00000568497 IFT46Q9NQC8 304 aa10.92□□□□□ -0.66
CLN3-235ENST00000568497 CCL28Q9NRJ3 127 aa10.92□□□□□ -0.66
CLN3-235ENST00000568497 ZNF107Q9UII5 783 aaPredicted RBP10.92□□□□□ -0.66
CLN3-235ENST00000568497 GAB2Q9UQC2 676 aa10.92□□□□□ -0.66
CLN3-235ENST00000568497 WSB1Q9Y6I7 421 aa10.92□□□□□ -0.66
CLN3-235ENST00000568497 RGS5O15539 181 aa10.91□□□□□ -0.66
CLN3-235ENST00000568497 SCGNO76038 276 aa10.91□□□□□ -0.66
CLN3-235ENST00000568497 APOA1P02647 267 aa10.91□□□□□ -0.66
CLN3-235ENST00000568497 PF4P02776 101 aa10.91□□□□□ -0.66
CLN3-235ENST00000568497 PF4V1P10720 104 aa10.91□□□□□ -0.66
CLN3-235ENST00000568497 HOXD3P31249 432 aaPredicted RBP10.91□□□□□ -0.66
CLN3-235ENST00000568497 PITPNAQ00169 270 aa10.91□□□□□ -0.66
CLN3-235ENST00000568497 DCTN2Q13561 401 aaKnown RBP10.91□□□□□ -0.66
CLN3-235ENST00000568497 Q6ZS49 121 aa10.91□□□□□ -0.66
CLN3-235ENST00000568497 CENPVQ7Z7K6 275 aaPredicted RBP10.91□□□□□ -0.66
CLN3-235ENST00000568497 OR5AU1Q8NGC0 362 aa10.91□□□□□ -0.66
CLN3-235ENST00000568497 WIPF2Q8TF74 440 aaPredicted RBP10.91□□□□□ -0.66
CLN3-235ENST00000568497 RAB2BQ8WUD1 216 aa10.91□□□□□ -0.66
CLN3-235ENST00000568497 SECTM1Q8WVN6 248 aa10.91□□□□□ -0.66
CLN3-235ENST00000568497 C6orf62Q9GZU0 229 aaPredicted RBP10.91□□□□□ -0.66
CLN3-235ENST00000568497 SLC35D1Q9NTN3 355 aa10.91□□□□□ -0.66
CLN3-235ENST00000568497 FBXO7Q9Y3I1 522 aa10.91□□□□□ -0.66
CLN3-235ENST00000568497 A3GALT2U3KPV4 340 aa10.91□□□□□ -0.66
CLN3-235ENST00000568497 A0A0A6YYH2 397 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 A6NJ64 397 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 ADARB2-AS1A8MUL3 147 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 G3V318 75 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 M0QYG6 137 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 ITGB1BP1O14713 200 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 NHLRC4P0CG21 123 aaPredicted RBP10.9□□□□□ -0.66
CLN3-235ENST00000568497 PRSS3P35030 304 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 TMBIM6P55061 237 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 DGCR2P98153 550 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 PJVKQ0ZLH3 352 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 ARL6IP1Q15041 203 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 KHDC1LQ5JSQ8 128 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 MZT2AQ6P582 158 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 C16orf82Q7Z2V1 217 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 SLC35E3Q7Z769 313 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 TMEM17Q86X19 198 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 LYSMD2Q8IV50 215 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 FAM71E2Q8N5Q1 922 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 OR52I2Q8NH67 350 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 DPF1Q92782 380 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 AKR1E2Q96JD6 320 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 RASL11BQ9BPW5 248 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 FAM103A1Q9BTL3 118 aaKnown RBP10.9□□□□□ -0.66
CLN3-235ENST00000568497 TOLLIPQ9H0E2 274 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 RBM38Q9H0Z9 239 aaKnown RBP10.9□□□□□ -0.66
CLN3-235ENST00000568497 TAS2R8Q9NYW2 309 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 EHFQ9NZC4 300 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 WASHC3Q9Y3C0 194 aa10.9□□□□□ -0.66
CLN3-235ENST00000568497 LCE6AA0A183 80 aa10.89□□□□□ -0.67
CLN3-235ENST00000568497 SRRM4A7MD48 611 aaKnown RBP10.89□□□□□ -0.67
CLN3-235ENST00000568497 NBR2O15453 112 aa10.89□□□□□ -0.67
CLN3-235ENST00000568497 TXNL1O43396 289 aa10.89□□□□□ -0.67
CLN3-235ENST00000568497 OR5H8P0DN80 308 aa10.89□□□□□ -0.67
CLN3-235ENST00000568497 LUMP51884 338 aaPredicted RBP10.89□□□□□ -0.67
CLN3-235ENST00000568497 RPS16P62249 146 aaKnown RBP10.89□□□□□ -0.67
CLN3-235ENST00000568497 SRSF7Q16629 238 aaKnown RBP eCLIP10.89□□□□□ -0.67
CLN3-235ENST00000568497 IDO2Q6ZQW0 420 aa10.89□□□□□ -0.67
CLN3-235ENST00000568497 OR5AN1Q8NGI8 311 aa10.89□□□□□ -0.67
CLN3-235ENST00000568497 MUC7Q8TAX7 377 aa10.89□□□□□ -0.67
CLN3-235ENST00000568497 GPX8Q8TED1 209 aa10.89□□□□□ -0.67
CLN3-235ENST00000568497 ACOT12Q8WYK0 555 aa10.89□□□□□ -0.67
CLN3-235ENST00000568497 RCC1LQ96I51 464 aaKnown RBP10.89□□□□□ -0.67
CLN3-235ENST00000568497 SLIRPQ9GZT3 109 aaKnown RBP10.89□□□□□ -0.67
CLN3-235ENST00000568497 PARP11Q9NR21 331 aa10.89□□□□□ -0.67
CLN3-235ENST00000568497 KLK11Q9UBX7 282 aa10.89□□□□□ -0.67
CLN3-235ENST00000568497 OR2W1Q9Y3N9 320 aa10.89□□□□□ -0.67
CLN3-235ENST00000568497 TNCP24821 2201 aa10.88□□□□□ -0.67
CLN3-235ENST00000568497 SMIM31A0A1B0GVY4 71 aa10.88□□□□□ -0.67
CLN3-235ENST00000568497 SLC25A17O43808 307 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms