RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 IFI27L2Q9H2X8 130 aa16.8■□□□□ 0.28
CLN3-230ENST00000568076 OR6C3Q9NZP0 311 aa16.8■□□□□ 0.28
CLN3-230ENST00000568076 CLN8Q9UBY8 286 aa16.8■□□□□ 0.28
CLN3-230ENST00000568076 SLC31A2O15432 143 aa16.79■□□□□ 0.28
CLN3-230ENST00000568076 HBG1P69891 147 aa16.79■□□□□ 0.28
CLN3-230ENST00000568076 HBG2P69892 147 aa16.79■□□□□ 0.28
CLN3-230ENST00000568076 BSPH1Q075Z2 132 aa16.79■□□□□ 0.28
CLN3-230ENST00000568076 ADIPOQQ15848 244 aa16.79■□□□□ 0.28
CLN3-230ENST00000568076 RPL39P5Q59GN2 51 aa16.79■□□□□ 0.28
CLN3-230ENST00000568076 GAFA1Q96PS6 74 aa16.79■□□□□ 0.28
CLN3-230ENST00000568076 OR4C12Q96R67 309 aa16.79■□□□□ 0.28
CLN3-230ENST00000568076 NCOR1P1Q9H4R4 102 aa16.79■□□□□ 0.28
CLN3-230ENST00000568076 MARCH11A6NNE9 402 aa16.78■□□□□ 0.28
CLN3-230ENST00000568076 TNFSF4P23510 183 aa16.78■□□□□ 0.28
CLN3-230ENST00000568076 LRRC75BQ2VPJ9 315 aa16.78■□□□□ 0.28
CLN3-230ENST00000568076 C1orf229Q6ZS94 237 aaPredicted RBP16.78■□□□□ 0.28
CLN3-230ENST00000568076 TCF23Q7RTU1 214 aa16.78■□□□□ 0.28
CLN3-230ENST00000568076 H2BFWTQ7Z2G1 175 aa16.78■□□□□ 0.28
CLN3-230ENST00000568076 LILRB2Q8N423 598 aa16.78■□□□□ 0.28
CLN3-230ENST00000568076 LEAP2Q969E1 77 aa16.78■□□□□ 0.28
CLN3-230ENST00000568076 ZDHHC16Q969W1 377 aa16.78■□□□□ 0.28
CLN3-230ENST00000568076 SMG1Q96Q15 3661 aaKnown RBP16.78■□□□□ 0.28
CLN3-230ENST00000568076 ZG16O60844 167 aa16.78■□□□□ 0.28
CLN3-230ENST00000568076 FAM87AP0C7U9 286 aa16.78■□□□□ 0.28
CLN3-230ENST00000568076 ETV3LQ6ZN32 361 aa16.78■□□□□ 0.28
CLN3-230ENST00000568076 SCGB1C1Q8TD33 95 aa16.78■□□□□ 0.28
CLN3-230ENST00000568076 CCL13Q99616 98 aa16.78■□□□□ 0.28
CLN3-230ENST00000568076 HIPK2Q9H2X6 1198 aa16.78■□□□□ 0.28
CLN3-230ENST00000568076 LAMP3Q9UQV4 416 aa16.78■□□□□ 0.28
CLN3-230ENST00000568076 FCGR3BO75015 233 aa16.77■□□□□ 0.28
CLN3-230ENST00000568076 GYPAP02724 150 aa16.77■□□□□ 0.28
CLN3-230ENST00000568076 OR4A8P0C604 315 aa16.77■□□□□ 0.28
CLN3-230ENST00000568076 CCL8P80075 99 aa16.77■□□□□ 0.28
CLN3-230ENST00000568076 SLC38A11Q08AI6 406 aa16.77■□□□□ 0.28
CLN3-230ENST00000568076 DPPA3Q6W0C5 159 aa16.77■□□□□ 0.28
CLN3-230ENST00000568076 FAM216BQ8N7L0 139 aa16.77■□□□□ 0.28
CLN3-230ENST00000568076 FAM216AQ8WUB2 273 aa16.77■□□□□ 0.28
CLN3-230ENST00000568076 SLC35B3Q9H1N7 401 aa16.77■□□□□ 0.28
CLN3-230ENST00000568076 VSIRQ9H7M9 311 aa16.77■□□□□ 0.28
CLN3-230ENST00000568076 RAI1Q7Z5J4 1906 aaPredicted RBP16.77■□□□□ 0.28
CLN3-230ENST00000568076 RBFOX3A6NFN3 312 aa16.77■□□□□ 0.27
CLN3-230ENST00000568076 M0R1X1 148 aa16.77■□□□□ 0.27
CLN3-230ENST00000568076 CD55P08174 381 aa16.77■□□□□ 0.27
CLN3-230ENST00000568076 OR9G9P0C7N8 305 aa16.77■□□□□ 0.27
CLN3-230ENST00000568076 HFEQ30201 348 aa16.77■□□□□ 0.27
CLN3-230ENST00000568076 SMUG1Q53HV7 270 aa16.77■□□□□ 0.27
CLN3-230ENST00000568076 OR8G2PQ6IF36 304 aa16.77■□□□□ 0.27
CLN3-230ENST00000568076 ZNF788Q6ZQV5 615 aa16.77■□□□□ 0.27
CLN3-230ENST00000568076 ZCCHC24Q8N2G6 241 aaKnown RBP16.77■□□□□ 0.27
CLN3-230ENST00000568076 CD300LFQ8TDQ1 290 aa16.77■□□□□ 0.27
CLN3-230ENST00000568076 DTD1Q8TEA8 209 aa16.77■□□□□ 0.27
CLN3-230ENST00000568076 SFT2D1Q8WV19 159 aa16.77■□□□□ 0.27
CLN3-230ENST00000568076 R3HDM4Q96D70 268 aa16.77■□□□□ 0.27
CLN3-230ENST00000568076 WDR61Q9GZS3 305 aaKnown RBP16.77■□□□□ 0.27
CLN3-230ENST00000568076 KIAA1456Q9P272 454 aa16.77■□□□□ 0.27
CLN3-230ENST00000568076 KBTBD11-OT1A0A1B0GTJ5 212 aa16.76■□□□□ 0.27
CLN3-230ENST00000568076 BTBD17A6NE02 478 aa16.76■□□□□ 0.27
CLN3-230ENST00000568076 PMS2P5A8MQ11 134 aa16.76■□□□□ 0.27
CLN3-230ENST00000568076 ATXN7O15265 892 aaPredicted RBP16.76■□□□□ 0.27
CLN3-230ENST00000568076 OR8U8P0C7N1 319 aa16.76■□□□□ 0.27
CLN3-230ENST00000568076 TEX36Q5VZQ5 186 aa16.76■□□□□ 0.27
CLN3-230ENST00000568076 SPINK9Q5DT21 86 aa16.75■□□□□ 0.27
CLN3-230ENST00000568076 PSMG3Q9BT73 122 aaPredicted RBP16.75■□□□□ 0.27
CLN3-230ENST00000568076 PARD6GQ9BYG4 376 aaPredicted RBP16.75■□□□□ 0.27
CLN3-230ENST00000568076 FAM234AQ9H0X4 552 aa16.75■□□□□ 0.27
CLN3-230ENST00000568076 ZNF665Q9H7R5 613 aa16.75■□□□□ 0.27
CLN3-230ENST00000568076 RPRMQ9NS64 109 aa16.75■□□□□ 0.27
CLN3-230ENST00000568076 GFOD1Q9NXC2 390 aa16.75■□□□□ 0.27
CLN3-230ENST00000568076 DSCAML1Q8TD84 2053 aa16.75■□□□□ 0.27
CLN3-230ENST00000568076 A0A1W2PPE3 182 aa16.75■□□□□ 0.27
CLN3-230ENST00000568076 C17orf100A8MU93 164 aa16.75■□□□□ 0.27
CLN3-230ENST00000568076 HPRT1P00492 218 aa16.75■□□□□ 0.27
CLN3-230ENST00000568076 OR13C7P0DN81 318 aa16.75■□□□□ 0.27
CLN3-230ENST00000568076 TLE4Q04727 773 aa16.75■□□□□ 0.27
CLN3-230ENST00000568076 CT45A1Q5HYN5 189 aa16.75■□□□□ 0.27
CLN3-230ENST00000568076 ADAM5Q6NVV9 412 aa16.75■□□□□ 0.27
CLN3-230ENST00000568076 CT45A3Q8NHU0 189 aa16.75■□□□□ 0.27
CLN3-230ENST00000568076 AIFM2Q9BRQ8 373 aa16.75■□□□□ 0.27
CLN3-230ENST00000568076 QTRT1Q9BXR0 403 aaKnown RBP16.75■□□□□ 0.27
CLN3-230ENST00000568076 MSRB2Q9Y3D2 182 aa16.75■□□□□ 0.27
CLN3-230ENST00000568076 DYSFO75923 2080 aa16.74■□□□□ 0.27
CLN3-230ENST00000568076 UBE2L5PA0A1B0GUS4 154 aa16.74■□□□□ 0.27
CLN3-230ENST00000568076 RBMXL2O75526 392 aaKnown RBP16.74■□□□□ 0.27
CLN3-230ENST00000568076 HAGHQ16775 308 aa16.74■□□□□ 0.27
CLN3-230ENST00000568076 AKIRIN2Q53H80 203 aa16.74■□□□□ 0.27
CLN3-230ENST00000568076 TRGV10A0A0A0MS01 117 aa16.73■□□□□ 0.27
CLN3-230ENST00000568076 AKR1C3P42330 323 aa16.73■□□□□ 0.27
CLN3-230ENST00000568076 ZNF726P1Q15940 193 aa16.73■□□□□ 0.27
CLN3-230ENST00000568076 DDB2Q92466 427 aa16.73■□□□□ 0.27
CLN3-230ENST00000568076 TAF15Q92804 592 aaKnown RBP eCLIP16.73■□□□□ 0.27
CLN3-230ENST00000568076 WFIKKN1Q96NZ8 548 aa16.73■□□□□ 0.27
CLN3-230ENST00000568076 SMDT1Q9H4I9 107 aa16.73■□□□□ 0.27
CLN3-230ENST00000568076 NDRG3Q9UGV2 375 aa16.73■□□□□ 0.27
CLN3-230ENST00000568076 ADGRG4Q8IZF6 3080 aa16.73■□□□□ 0.27
CLN3-230ENST00000568076 ITGB1BP1O14713 200 aa16.73■□□□□ 0.27
CLN3-230ENST00000568076 IRF2P14316 349 aa16.73■□□□□ 0.27
CLN3-230ENST00000568076 OR2B8PP59922 312 aa16.73■□□□□ 0.27
CLN3-230ENST00000568076 RPS16P62249 146 aaKnown RBP16.73■□□□□ 0.27
CLN3-230ENST00000568076 AWAT1Q58HT5 328 aa16.73■□□□□ 0.27
CLN3-230ENST00000568076 SSX9Q7RTT3 188 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms