RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 WSB1Q9Y6I7 421 aa14.65□□□□□ -0.06
CLN3-227ENST00000567495 CLEC2LP0C7M8 214 aa14.64□□□□□ -0.07
CLN3-227ENST00000567495 CRIP2P52943 208 aaPredicted RBP14.64□□□□□ -0.07
CLN3-227ENST00000567495 CX3CL1P78423 397 aa14.64□□□□□ -0.07
CLN3-227ENST00000567495 ZNF260Q3ZCT1 412 aa14.64□□□□□ -0.07
CLN3-227ENST00000567495 C18orf65Q6ZTR6 163 aa14.64□□□□□ -0.07
CLN3-227ENST00000567495 MYOZ3Q8TDC0 251 aa14.64□□□□□ -0.07
CLN3-227ENST00000567495 C4orf3Q8WVX3 66 aa14.64□□□□□ -0.07
CLN3-227ENST00000567495 RNF167Q9H6Y7 350 aa14.64□□□□□ -0.07
CLN3-227ENST00000567495 SDHAF2Q9NX18 166 aa14.64□□□□□ -0.07
CLN3-227ENST00000567495 METTL1Q9UBP6 276 aaKnown RBP14.64□□□□□ -0.07
CLN3-227ENST00000567495 TMEM235A6NFC5 223 aa14.63□□□□□ -0.07
CLN3-227ENST00000567495 AIREO43918 545 aa14.63□□□□□ -0.07
CLN3-227ENST00000567495 IGLV1-40P01703 118 aa14.63□□□□□ -0.07
CLN3-227ENST00000567495 IGKV1-16P04430 117 aa14.63□□□□□ -0.07
CLN3-227ENST00000567495 RRASP10301 218 aa14.63□□□□□ -0.07
CLN3-227ENST00000567495 PSG5Q15238 335 aa14.63□□□□□ -0.07
CLN3-227ENST00000567495 RTL8BQ17RB0 113 aa14.63□□□□□ -0.07
CLN3-227ENST00000567495 FOXB2Q5VYV0 432 aa14.63□□□□□ -0.07
CLN3-227ENST00000567495 CNIH2Q6PI25 160 aa14.63□□□□□ -0.07
CLN3-227ENST00000567495 ZNF562Q6V9R5 426 aa14.63□□□□□ -0.07
CLN3-227ENST00000567495 MINDY2Q8NBR6 621 aa14.63□□□□□ -0.07
CLN3-227ENST00000567495 DPF1Q92782 380 aa14.63□□□□□ -0.07
CLN3-227ENST00000567495 UBE2E2Q96LR5 201 aa14.63□□□□□ -0.07
CLN3-227ENST00000567495 DIABLOQ9NR28 239 aa14.63□□□□□ -0.07
CLN3-227ENST00000567495 SLC35D1Q9NTN3 355 aa14.63□□□□□ -0.07
CLN3-227ENST00000567495 ZMAT5Q9UDW3 170 aaKnown RBP14.63□□□□□ -0.07
CLN3-227ENST00000567495 ELF5Q9UKW6 265 aaPredicted RBP14.63□□□□□ -0.07
CLN3-227ENST00000567495 G3V318 75 aa14.62□□□□□ -0.07
CLN3-227ENST00000567495 SLC22A5O76082 557 aa14.62□□□□□ -0.07
CLN3-227ENST00000567495 NUDCD2Q8WVJ2 157 aa14.62□□□□□ -0.07
CLN3-227ENST00000567495 RAX2Q96IS3 184 aa14.62□□□□□ -0.07
CLN3-227ENST00000567495 SPATA2Q9UM82 520 aa14.62□□□□□ -0.07
CLN3-227ENST00000567495 FOXA2Q9Y261 457 aaPredicted RBP14.62□□□□□ -0.07
CLN3-227ENST00000567495 OR2W1Q9Y3N9 320 aa14.62□□□□□ -0.07
CLN3-227ENST00000567495 TRAV18A0A075B6X5 111 aa14.61□□□□□ -0.07
CLN3-227ENST00000567495 IGKV1D-8A0A087WSZ0 117 aa14.61□□□□□ -0.07
CLN3-227ENST00000567495 FCN1O00602 326 aa14.61□□□□□ -0.07
CLN3-227ENST00000567495 LUMP51884 338 aaPredicted RBP14.61□□□□□ -0.07
CLN3-227ENST00000567495 LINC00205P59089 165 aa14.61□□□□□ -0.07
CLN3-227ENST00000567495 AKIRIN2Q53H80 203 aa14.61□□□□□ -0.07
CLN3-227ENST00000567495 PYHIN1Q6K0P9 492 aa14.61□□□□□ -0.07
CLN3-227ENST00000567495 LCNL1Q6ZST4 164 aa14.61□□□□□ -0.07
CLN3-227ENST00000567495 OR5H6Q8NGV6 325 aa14.61□□□□□ -0.07
CLN3-227ENST00000567495 ABHD5Q8WTS1 349 aa14.61□□□□□ -0.07
CLN3-227ENST00000567495 SLC25A38Q96DW6 304 aa14.61□□□□□ -0.07
CLN3-227ENST00000567495 YIPF6Q96EC8 236 aa14.61□□□□□ -0.07
CLN3-227ENST00000567495 VSIG4Q9Y279 399 aa14.61□□□□□ -0.07
CLN3-227ENST00000567495 NUBP2Q9Y5Y2 271 aa14.61□□□□□ -0.07
CLN3-227ENST00000567495 TGP01266 2768 aa14.6□□□□□ -0.07
CLN3-227ENST00000567495 CD40LGP29965 261 aa14.6□□□□□ -0.07
CLN3-227ENST00000567495 RAB9AP51151 201 aa14.6□□□□□ -0.07
CLN3-227ENST00000567495 NDPQ00604 133 aa14.6□□□□□ -0.07
CLN3-227ENST00000567495 RUNX1Q01196 453 aa14.6□□□□□ -0.07
CLN3-227ENST00000567495 C19orf54Q5BKX5 351 aa14.6□□□□□ -0.07
CLN3-227ENST00000567495 PPP1R27Q86WC6 154 aa14.6□□□□□ -0.07
CLN3-227ENST00000567495 KLK15Q9H2R5 256 aa14.6□□□□□ -0.07
CLN3-227ENST00000567495 ANXA10Q9UJ72 324 aa14.6□□□□□ -0.07
CLN3-227ENST00000567495 TRIM64CA6NLI5 447 aa14.59□□□□□ -0.07
CLN3-227ENST00000567495 SLC25A17O43808 307 aa14.59□□□□□ -0.07
CLN3-227ENST00000567495 SSX5O60225 188 aa14.59□□□□□ -0.07
CLN3-227ENST00000567495 PRB2P02812 416 aaPredicted RBP14.59□□□□□ -0.07
CLN3-227ENST00000567495 ECSCRQ19T08 205 aa14.59□□□□□ -0.07
CLN3-227ENST00000567495 TMEM177Q53S58 311 aa14.59□□□□□ -0.07
CLN3-227ENST00000567495 ZNF645Q8N7E2 425 aa14.59□□□□□ -0.07
CLN3-227ENST00000567495 ZNF491Q8N8L2 437 aa14.59□□□□□ -0.07
CLN3-227ENST00000567495 OR5M8Q8NGP6 311 aa14.59□□□□□ -0.07
CLN3-227ENST00000567495 HARBI1Q96MB7 349 aa14.59□□□□□ -0.07
CLN3-227ENST00000567495 SHOXO15266 292 aa14.58□□□□□ -0.08
CLN3-227ENST00000567495 CA2P00918 260 aa14.58□□□□□ -0.08
CLN3-227ENST00000567495 HLA-DQB1P01920 261 aa14.58□□□□□ -0.08
CLN3-227ENST00000567495 EGR2P11161 476 aaPredicted RBP14.58□□□□□ -0.08
CLN3-227ENST00000567495 DUTP33316 252 aaKnown RBP14.58□□□□□ -0.08
CLN3-227ENST00000567495 CBX5P45973 191 aa14.58□□□□□ -0.08
CLN3-227ENST00000567495 EGFEM1PQ0D2K5 195 aa14.58□□□□□ -0.08
CLN3-227ENST00000567495 KIAA0141Q14154 515 aaPredicted RBP14.58□□□□□ -0.08
CLN3-227ENST00000567495 ACTBL2Q562R1 376 aa14.58□□□□□ -0.08
CLN3-227ENST00000567495 MRAPQ8TCY5 172 aa14.58□□□□□ -0.08
CLN3-227ENST00000567495 ARPC1AQ92747 370 aa14.58□□□□□ -0.08
CLN3-227ENST00000567495 S100A16Q96FQ6 103 aaKnown RBP14.58□□□□□ -0.08
CLN3-227ENST00000567495 TMEM68Q96MH6 324 aa14.58□□□□□ -0.08
CLN3-227ENST00000567495 CLCC1Q96S66 551 aa14.58□□□□□ -0.08
CLN3-227ENST00000567495 AUNIPQ9H7T9 357 aa14.58□□□□□ -0.08
CLN3-227ENST00000567495 AURKAIP1Q9NWT8 199 aaPredicted RBP14.58□□□□□ -0.08
CLN3-227ENST00000567495 FBXO7Q9Y3I1 522 aa14.58□□□□□ -0.08
CLN3-227ENST00000567495 A0A1W2PN81 502 aa14.57□□□□□ -0.08
CLN3-227ENST00000567495 CNIH1O95406 144 aa14.57□□□□□ -0.08
CLN3-227ENST00000567495 IGLV2-23P01705 113 aa14.57□□□□□ -0.08
CLN3-227ENST00000567495 CHRNA7P36544 502 aa14.57□□□□□ -0.08
CLN3-227ENST00000567495 RPS19P39019 145 aaKnown RBP14.57□□□□□ -0.08
CLN3-227ENST00000567495 RAB25P57735 213 aa14.57□□□□□ -0.08
CLN3-227ENST00000567495 FHL3Q13643 280 aa14.57□□□□□ -0.08
CLN3-227ENST00000567495 FXYD3Q14802 87 aa14.57□□□□□ -0.08
CLN3-227ENST00000567495 DEFB136Q30KP8 78 aa14.57□□□□□ -0.08
CLN3-227ENST00000567495 UNQ5815/PRO19632Q6UWF5 114 aa14.57□□□□□ -0.08
CLN3-227ENST00000567495 HOGA1Q86XE5 327 aa14.57□□□□□ -0.08
CLN3-227ENST00000567495 BVESQ8NE79 360 aa14.57□□□□□ -0.08
CLN3-227ENST00000567495 BEST4Q8NFU0 473 aa14.57□□□□□ -0.08
CLN3-227ENST00000567495 OSR1Q8TAX0 266 aaPredicted RBP14.57□□□□□ -0.08
CLN3-227ENST00000567495 DDB2Q92466 427 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms