RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 UTF1Q5T230 341 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 FAM90A2PQ658T7 463 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 OR13A1Q8NGR1 328 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 LEAP2Q969E1 77 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 GALMQ96C23 342 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 TUBA4BQ9H853 241 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 LIN7CQ9NUP9 197 aaKnown RBP11.31□□□□□ -0.6
CLK3-215ENST00000564353 KCNIP1Q9NZI2 227 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 KMT2EQ8IZD2 1858 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 SPAARA0A1B0GVQ0 90 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 ODAMA1E959 279 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 MAP1LC3B2A6NCE7 125 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 IFITM10A6NMD0 228 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 EGR1P18146 543 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 PAX6P26367 422 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 BRWD1-AS2P59051 145 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 NUTF2P61970 127 aaKnown RBP11.31□□□□□ -0.6
CLK3-215ENST00000564353 MRPL49Q13405 166 aaKnown RBP11.31□□□□□ -0.6
CLK3-215ENST00000564353 RTP5Q14D33 572 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 RPP25LQ8N5L8 163 aaKnown RBP11.31□□□□□ -0.6
CLK3-215ENST00000564353 LHX4Q969G2 390 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 IL22RA2Q969J5 263 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 COQ2Q96H96 371 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 GPR61Q9BZJ8 451 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 MAP1LC3BQ9GZQ8 125 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 PRDM13Q9H4Q3 707 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 DOK5Q9P104 306 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 GALR2O43603 387 aaPredicted RBP11.3□□□□□ -0.6
CLK3-215ENST00000564353 HSPB1P04792 205 aaKnown RBP11.3□□□□□ -0.6
CLK3-215ENST00000564353 BCL2P10415 239 aa11.3□□□□□ -0.6
CLK3-215ENST00000564353 RAC2P15153 192 aa11.3□□□□□ -0.6
CLK3-215ENST00000564353 MDH2P40926 338 aaKnown RBP11.3□□□□□ -0.6
CLK3-215ENST00000564353 ADIRFQ15847 76 aa11.3□□□□□ -0.6
CLK3-215ENST00000564353 ACSM6Q6P461 480 aa11.3□□□□□ -0.6
CLK3-215ENST00000564353 LINC00596Q86U02 117 aa11.3□□□□□ -0.6
CLK3-215ENST00000564353 C9orf106Q8NAJ2 232 aa11.3□□□□□ -0.6
CLK3-215ENST00000564353 YPEL4Q96NS1 127 aa11.3□□□□□ -0.6
CLK3-215ENST00000564353 LINC00473A8K010 186 aa11.3□□□□□ -0.6
CLK3-215ENST00000564353 ZNF883P0CG24 379 aa11.3□□□□□ -0.6
CLK3-215ENST00000564353 ZNF25P17030 456 aaPredicted RBP11.3□□□□□ -0.6
CLK3-215ENST00000564353 COL10A1Q03692 680 aa11.3□□□□□ -0.6
CLK3-215ENST00000564353 GABRA6Q16445 453 aa11.3□□□□□ -0.6
CLK3-215ENST00000564353 SPRNQ5BIV9 151 aa11.3□□□□□ -0.6
CLK3-215ENST00000564353 GCSAMLQ5JQS6 135 aa11.3□□□□□ -0.6
CLK3-215ENST00000564353 FAM201AQ5SY85 155 aa11.3□□□□□ -0.6
CLK3-215ENST00000564353 NINJ1Q92982 152 aa11.3□□□□□ -0.6
CLK3-215ENST00000564353 WDR61Q9GZS3 305 aaKnown RBP11.3□□□□□ -0.6
CLK3-215ENST00000564353 RELNP78509 3460 aa11.3□□□□□ -0.6
CLK3-215ENST00000564353 TRBV6-6A0A0A6YYG2 114 aa11.29□□□□□ -0.6
CLK3-215ENST00000564353 TMEM238LA0A1B0GVL6 79 aa11.29□□□□□ -0.6
CLK3-215ENST00000564353 HOXC12P31275 282 aa11.29□□□□□ -0.6
CLK3-215ENST00000564353 TNFSF10P50591 281 aa11.29□□□□□ -0.6
CLK3-215ENST00000564353 TGFBR3Q03167 851 aa11.29□□□□□ -0.6
CLK3-215ENST00000564353 TNFRSF9Q07011 255 aa11.29□□□□□ -0.6
CLK3-215ENST00000564353 LRP11Q86VZ4 500 aa11.29□□□□□ -0.6
CLK3-215ENST00000564353 C11orf53Q8IXP5 236 aa11.29□□□□□ -0.6
CLK3-215ENST00000564353 TAF15Q92804 592 aaKnown RBP eCLIP11.29□□□□□ -0.6
CLK3-215ENST00000564353 SIRT7Q9NRC8 400 aa11.29□□□□□ -0.6
CLK3-215ENST00000564353 SLC39A9Q9NUM3 307 aa11.29□□□□□ -0.6
CLK3-215ENST00000564353 HEATR1Q9H583 2144 aaKnown RBP11.29□□□□□ -0.6
CLK3-215ENST00000564353 ZNF737O75373 536 aa11.29□□□□□ -0.6
CLK3-215ENST00000564353 HBG1P69891 147 aa11.29□□□□□ -0.6
CLK3-215ENST00000564353 HBG2P69892 147 aa11.29□□□□□ -0.6
CLK3-215ENST00000564353 LRRC75BQ2VPJ9 315 aa11.29□□□□□ -0.6
CLK3-215ENST00000564353 TMEM204Q9BSN7 226 aa11.29□□□□□ -0.6
CLK3-215ENST00000564353 HBE1P02100 147 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 CEACAM1P13688 526 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 GAMTQ14353 236 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 ZNF146Q15072 292 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 FAM214BQ7L5A3 538 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 OR2Z1Q8NG97 314 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 GMPPAQ96IJ6 420 aaPredicted RBP11.28□□□□□ -0.6
CLK3-215ENST00000564353 TP53TG5Q9Y2B4 290 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 PIEZO2Q9H5I5 2752 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 A0A1B0GW64 132 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 TMEM30CPA0ZSE6 113 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 SMCO3A2RU48 225 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 PPIHO43447 177 aaKnown RBP11.28□□□□□ -0.6
CLK3-215ENST00000564353 HIST1H2BKO60814 126 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 HIST1H2BJP06899 126 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 CECR9P0C854 216 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 FGF7P21781 194 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 HIST1H2BOP23527 126 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 HIST1H2BBP33778 126 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 HIST1H2BDP58876 126 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 HIST1H2BCP62807 126 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 AKAP13Q12802 2813 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 HIST2H2BEQ16778 126 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 KHDC3LQ587J8 217 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.28□□□□□ -0.6
CLK3-215ENST00000564353 SP5Q6BEB4 398 aaPredicted RBP11.28□□□□□ -0.6
CLK3-215ENST00000564353 HIST1H2BHQ93079 126 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 LSM10Q969L4 123 aaKnown RBP11.28□□□□□ -0.6
CLK3-215ENST00000564353 SDSLQ96GA7 329 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 HIST1H2BNQ99877 126 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 HIST1H2BMQ99879 126 aa11.28□□□□□ -0.6
CLK3-215ENST00000564353 MBNL3Q9NUK0 354 aaKnown RBP11.28□□□□□ -0.6
CLK3-215ENST00000564353 UBE2G2P60604 165 aa11.27□□□□□ -0.6
CLK3-215ENST00000564353 TRIP6Q15654 476 aaKnown RBP11.27□□□□□ -0.6
CLK3-215ENST00000564353 SAPCD1Q5SSQ6 148 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms