RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 OR2D2Q9H210 308 aa13.13□□□□□ -0.31
CLK3-210ENST00000563112 SLC35D1Q9NTN3 355 aa13.13□□□□□ -0.31
CLK3-210ENST00000563112 ZNF230Q9UIE0 474 aaPredicted RBP13.13□□□□□ -0.31
CLK3-210ENST00000563112 GAB2Q9UQC2 676 aa13.13□□□□□ -0.31
CLK3-210ENST00000563112 FOXA2Q9Y261 457 aaPredicted RBP13.13□□□□□ -0.31
CLK3-210ENST00000563112 A3GALT2U3KPV4 340 aa13.13□□□□□ -0.31
CLK3-210ENST00000563112 SMIM30A4D0T7 59 aa13.12□□□□□ -0.31
CLK3-210ENST00000563112 FCN1O00602 326 aa13.12□□□□□ -0.31
CLK3-210ENST00000563112 SCGNO76038 276 aa13.12□□□□□ -0.31
CLK3-210ENST00000563112 OR8U8P0C7N1 319 aa13.12□□□□□ -0.31
CLK3-210ENST00000563112 CD40LGP29965 261 aa13.12□□□□□ -0.31
CLK3-210ENST00000563112 RUNX1Q01196 453 aa13.12□□□□□ -0.31
CLK3-210ENST00000563112 TAGLNQ01995 201 aaKnown RBP13.12□□□□□ -0.31
CLK3-210ENST00000563112 DCTN2Q13561 401 aaKnown RBP13.12□□□□□ -0.31
CLK3-210ENST00000563112 CDNFQ49AH0 187 aa13.12□□□□□ -0.31
CLK3-210ENST00000563112 ZNF773Q6PK81 442 aa13.12□□□□□ -0.31
CLK3-210ENST00000563112 ZNF562Q6V9R5 426 aa13.12□□□□□ -0.31
CLK3-210ENST00000563112 PPP1R27Q86WC6 154 aa13.12□□□□□ -0.31
CLK3-210ENST00000563112 NR2C2APQ86WQ0 139 aa13.12□□□□□ -0.31
CLK3-210ENST00000563112 MAFIPQ8WZ33 124 aa13.12□□□□□ -0.31
CLK3-210ENST00000563112 GNB4Q9HAV0 340 aa13.12□□□□□ -0.31
CLK3-210ENST00000563112 NUBP2Q9Y5Y2 271 aa13.12□□□□□ -0.31
CLK3-210ENST00000563112 SEC14L6B5MCN3 397 aa13.11□□□□□ -0.31
CLK3-210ENST00000563112 RAMP3O60896 148 aa13.11□□□□□ -0.31
CLK3-210ENST00000563112 IGKV1-16P04430 117 aa13.11□□□□□ -0.31
CLK3-210ENST00000563112 LGALS7P47929 136 aa13.11□□□□□ -0.31
CLK3-210ENST00000563112 NDPQ00604 133 aa13.11□□□□□ -0.31
CLK3-210ENST00000563112 ZNF616Q08AN1 781 aa13.11□□□□□ -0.31
CLK3-210ENST00000563112 FHL3Q13643 280 aa13.11□□□□□ -0.31
CLK3-210ENST00000563112 KIAA0141Q14154 515 aaPredicted RBP13.11□□□□□ -0.31
CLK3-210ENST00000563112 ACTBL2Q562R1 376 aa13.11□□□□□ -0.31
CLK3-210ENST00000563112 PYHIN1Q6K0P9 492 aa13.11□□□□□ -0.31
CLK3-210ENST00000563112 UNQ5815/PRO19632Q6UWF5 114 aa13.11□□□□□ -0.31
CLK3-210ENST00000563112 Q6ZS49 121 aa13.11□□□□□ -0.31
CLK3-210ENST00000563112 OR5B12Q96R08 314 aa13.11□□□□□ -0.31
CLK3-210ENST00000563112 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.11□□□□□ -0.315e-6■■□□□ 12.9
CLK3-210ENST00000563112 SDHAF2Q9NX18 166 aa13.11□□□□□ -0.31
CLK3-210ENST00000563112 DAPK2Q9UIK4 370 aa13.11□□□□□ -0.31
CLK3-210ENST00000563112 FBXO7Q9Y3I1 522 aa13.11□□□□□ -0.31
CLK3-210ENST00000563112 I3L521 148 aa13.1□□□□□ -0.31
CLK3-210ENST00000563112 SLC25A17O43808 307 aa13.1□□□□□ -0.31
CLK3-210ENST00000563112 CA2P00918 260 aa13.1□□□□□ -0.31
CLK3-210ENST00000563112 DTYMKP23919 212 aa13.1□□□□□ -0.31
CLK3-210ENST00000563112 LINC00205P59089 165 aa13.1□□□□□ -0.31
CLK3-210ENST00000563112 PITPNAQ00169 270 aa13.1□□□□□ -0.31
CLK3-210ENST00000563112 AKIRIN2Q53H80 203 aa13.1□□□□□ -0.31
CLK3-210ENST00000563112 CNIH1O95406 144 aa13.09□□□□□ -0.31
CLK3-210ENST00000563112 CTXN2P0C2S0 81 aa13.09□□□□□ -0.31
CLK3-210ENST00000563112 RRASP10301 218 aa13.09□□□□□ -0.31
CLK3-210ENST00000563112 EGR2P11161 476 aaPredicted RBP13.09□□□□□ -0.31
CLK3-210ENST00000563112 LUMP51884 338 aaPredicted RBP13.09□□□□□ -0.31
CLK3-210ENST00000563112 RTL8BQ17RB0 113 aa13.09□□□□□ -0.31
CLK3-210ENST00000563112 C19orf54Q5BKX5 351 aa13.09□□□□□ -0.31
CLK3-210ENST00000563112 HACD4Q5VWC8 232 aa13.09□□□□□ -0.31
CLK3-210ENST00000563112 SFXN4Q6P4A7 337 aa13.09□□□□□ -0.31
CLK3-210ENST00000563112 LFNGQ8NES3 379 aa13.09□□□□□ -0.31
CLK3-210ENST00000563112 ARPC1AQ92747 370 aa13.09□□□□□ -0.31
CLK3-210ENST00000563112 ADTRPQ96IZ2 230 aa13.09□□□□□ -0.31
CLK3-210ENST00000563112 FAM103A1Q9BTL3 118 aaKnown RBP13.09□□□□□ -0.31
CLK3-210ENST00000563112 ST6GALNAC5Q9BVH7 336 aa13.09□□□□□ -0.31
CLK3-210ENST00000563112 OR51E2Q9H255 320 aa13.09□□□□□ -0.31
CLK3-210ENST00000563112 DCSTAMPQ9H295 470 aa13.09□□□□□ -0.31
CLK3-210ENST00000563112 SOX15O60248 233 aa13.08□□□□□ -0.32
CLK3-210ENST00000563112 SNRPBP14678 240 aaKnown RBP13.08□□□□□ -0.32
CLK3-210ENST00000563112 GNB1P62873 340 aa13.08□□□□□ -0.32
CLK3-210ENST00000563112 MXD1Q05195 221 aa13.08□□□□□ -0.32
CLK3-210ENST00000563112 FXYD3Q14802 87 aa13.08□□□□□ -0.32
CLK3-210ENST00000563112 ZNF260Q3ZCT1 412 aa13.08□□□□□ -0.32
CLK3-210ENST00000563112 H1FOOQ8IZA3 346 aaPredicted RBP13.08□□□□□ -0.32
CLK3-210ENST00000563112 BVESQ8NE79 360 aa13.08□□□□□ -0.32
CLK3-210ENST00000563112 HARBI1Q96MB7 349 aa13.08□□□□□ -0.32
CLK3-210ENST00000563112 SLA2Q9H6Q3 261 aa13.08□□□□□ -0.32
CLK3-210ENST00000563112 ELF5Q9UKW6 265 aaPredicted RBP13.08□□□□□ -0.32
CLK3-210ENST00000563112 LOC100506127A0A0U1RQW1 187 aa13.07□□□□□ -0.32
CLK3-210ENST00000563112 SHOXO15266 292 aa13.07□□□□□ -0.32
CLK3-210ENST00000563112 SDC2P34741 201 aa13.07□□□□□ -0.32
CLK3-210ENST00000563112 INSL3P51460 131 aa13.07□□□□□ -0.32
CLK3-210ENST00000563112 GNG2P59768 71 aa13.07□□□□□ -0.32
CLK3-210ENST00000563112 CD69Q07108 199 aa13.07□□□□□ -0.32
CLK3-210ENST00000563112 NEDD8Q15843 81 aa13.07□□□□□ -0.32
CLK3-210ENST00000563112 TMEM177Q53S58 311 aa13.07□□□□□ -0.32
CLK3-210ENST00000563112 GRPEL2Q8TAA5 225 aa13.07□□□□□ -0.32
CLK3-210ENST00000563112 LGALS14Q8TCE9 139 aa13.07□□□□□ -0.32
CLK3-210ENST00000563112 CASTOR1Q8WTX7 329 aa13.07□□□□□ -0.32
CLK3-210ENST00000563112 RHBDL2Q9NX52 303 aa13.07□□□□□ -0.32
CLK3-210ENST00000563112 IGKV1D-8A0A087WSZ0 117 aa13.06□□□□□ -0.32
CLK3-210ENST00000563112 LINC01619G3V211 115 aa13.06□□□□□ -0.32
CLK3-210ENST00000563112 OVOL1O14753 267 aa13.06□□□□□ -0.32
CLK3-210ENST00000563112 LGALS1P09382 135 aaKnown RBP13.06□□□□□ -0.32
CLK3-210ENST00000563112 CD36P16671 472 aa13.06□□□□□ -0.32
CLK3-210ENST00000563112 ECI1P42126 302 aa13.06□□□□□ -0.32
CLK3-210ENST00000563112 SCAND1P57086 179 aa13.06□□□□□ -0.32
CLK3-210ENST00000563112 TPPP2P59282 170 aa13.06□□□□□ -0.32
CLK3-210ENST00000563112 KCTD21Q4G0X4 260 aa13.06□□□□□ -0.32
CLK3-210ENST00000563112 NUDCD2Q8WVJ2 157 aa13.06□□□□□ -0.32
CLK3-210ENST00000563112 MS4A10Q96PG2 267 aa13.06□□□□□ -0.32
CLK3-210ENST00000563112 TPSG1Q9NRR2 321 aa13.06□□□□□ -0.32
CLK3-210ENST00000563112 ZNF355PQ9NSJ1 428 aa13.06□□□□□ -0.32
CLK3-210ENST00000563112 ETV7Q9Y603 341 aa13.06□□□□□ -0.32
CLK3-210ENST00000563112 TMEM235A6NFC5 223 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms