RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 GYPAP02724 150 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 LIPFP07098 398 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 LPAR6P43657 344 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 PRRX1P54821 245 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 SPCS3P61009 180 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 UBE2KP61086 200 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 RAB11AP62491 216 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 PRAMEF5Q5TYX0 476 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 PDPNQ86YL7 162 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 SLC7A5P1Q8MH63 180 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 LILRB2Q8N423 598 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 DMBX1Q8NFW5 382 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 OR52L2PQ8NGH6 319 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 OR5B3Q8NH48 314 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 OR4A16Q8NH70 328 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 OR9G1Q8NH87 305 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 C8orf46Q8TAG6 207 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 GPR146Q96CH1 333 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 RBMXL1Q96E39 390 aaKnown RBP6.23□□□□□ -1.41
VPS39-204ENST00000561818 CITED4Q96RK1 184 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 ENY2Q9NPA8 101 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 RALYQ9UKM9 306 aaKnown RBP6.23□□□□□ -1.41
VPS39-204ENST00000561818 TIMM9Q9Y5J7 89 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 KLF2Q9Y5W3 355 aaPredicted RBP6.23□□□□□ -1.41
VPS39-204ENST00000561818 PLCE1Q9P212 2302 aa6.23□□□□□ -1.41
VPS39-204ENST00000561818 AKAP13Q12802 2813 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 MFSD2BA6NFX1 497 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 A8MXK9 166 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 I3L521 148 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 CHST1O43916 411 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 DANCRP0C864 163 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 P0C879 139 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 OMGP23515 440 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 CEACAM3P40198 252 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 COMPP49747 757 aaPredicted RBP6.22□□□□□ -1.41
VPS39-204ENST00000561818 ERVFRD-1P60508 538 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 POLR2GP62487 172 aaKnown RBP eCLIP6.22□□□□□ -1.41
VPS39-204ENST00000561818 TFF3Q07654 80 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 C17orf58Q2M2W7 97 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 ZNF585BQ52M93 769 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 AKR1C8PQ5T2L2 129 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 KIR3DL3Q8N743 410 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 OR10P1Q8NGE3 313 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 OR4C13Q8NGP0 309 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 OR10X1Q8NGY0 326 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 R3HDM4Q96D70 268 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 CCL13Q99616 98 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 RNF5Q99942 180 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 TMEM147Q9BVK8 224 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 IFI27L2Q9H2X8 130 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 C11orf1Q9H5F2 150 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 CYTL1Q9NRR1 136 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 PSENENQ9NZ42 101 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 FOXA2Q9Y261 457 aaPredicted RBP6.22□□□□□ -1.41
VPS39-204ENST00000561818 FRYQ5TBA9 3013 aa6.22□□□□□ -1.41
VPS39-204ENST00000561818 IGF2RP11717 2491 aa6.21□□□□□ -1.41
VPS39-204ENST00000561818 TANC2Q9HCD6 1990 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 IGHV3OR15-7A0A075B7D8 119 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 IGHV3-64DA0A0J9YX35 117 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 A0A1W2PN81 502 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 MSGN1A6NI15 193 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 DEFB108AA8MXU0 73 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 OOSP1A8MZH6 123 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 INS-IGF2F8WCM5 200 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 H7C2Y5 167 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 M0R1W7 72 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 TNFRSF13BO14836 293 aaPredicted RBP6.21□□□□□ -1.42
VPS39-204ENST00000561818 ATXN7O15265 892 aaPredicted RBP6.21□□□□□ -1.42
VPS39-204ENST00000561818 SHOXO15266 292 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 ZNF205O95201 554 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 IFNA1P01562 189 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 IGKV1-5P01602 117 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 PRH1P02810 166 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 M6PRP20645 277 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 EPHA1P21709 976 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 CHRNA7P36544 502 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 LGALS7P47929 136 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 PPT1P50897 306 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 OR2B8PP59922 312 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 GNB2P62879 340 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 PJVKQ0ZLH3 352 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 RAB31Q13636 194 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 PEA15Q15121 130 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 AANATQ16613 207 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 MST1LQ2TV78 715 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 NCR3LG1Q68D85 454 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 RPL7L1Q6DKI1 246 aaKnown RBP6.21□□□□□ -1.42
VPS39-204ENST00000561818 C1orf122Q6ZSJ8 110 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 ZNF833PQ6ZTB9 187 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 ZNF709Q8N972 641 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 ZNF439Q8NDP4 499 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 BEND2Q8NDZ0 799 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 OR5C1Q8NGR4 320 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 SUN5Q8TC36 379 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 DTD1Q8TEA8 209 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 TMED6Q8WW62 240 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 TMEM190Q8WZ59 177 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 DCTN5Q9BTE1 182 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 BARX1Q9HBU1 254 aaPredicted RBP6.21□□□□□ -1.42
VPS39-204ENST00000561818 BET1LQ9NYM9 111 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms