RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 TGP01266 2768 aa12.23□□□□□ -0.45
VPS39-203ENST00000561797 SCGNO76038 276 aa12.23□□□□□ -0.45
VPS39-203ENST00000561797 DUS4LO95620 317 aaKnown RBP12.23□□□□□ -0.45
VPS39-203ENST00000561797 DIRAS3O95661 229 aa12.23□□□□□ -0.45
VPS39-203ENST00000561797 DTYMKP23919 212 aa12.23□□□□□ -0.45
VPS39-203ENST00000561797 HOXD3P31249 432 aaPredicted RBP12.23□□□□□ -0.45
VPS39-203ENST00000561797 TGFBR1P36897 503 aa12.23□□□□□ -0.45
VPS39-203ENST00000561797 GNG2P59768 71 aa12.23□□□□□ -0.45
VPS39-203ENST00000561797 NDPQ00604 133 aa12.23□□□□□ -0.45
VPS39-203ENST00000561797 ZNF260Q3ZCT1 412 aa12.23□□□□□ -0.45
VPS39-203ENST00000561797 ZNF660Q6AZW8 331 aaPredicted RBP12.23□□□□□ -0.45
VPS39-203ENST00000561797 PDPNQ86YL7 162 aa12.23□□□□□ -0.45
VPS39-203ENST00000561797 H1FOOQ8IZA3 346 aaPredicted RBP12.23□□□□□ -0.45
VPS39-203ENST00000561797 TSPAN14Q8NG11 270 aa12.23□□□□□ -0.45
VPS39-203ENST00000561797 FLYWCH2Q96CP2 140 aaKnown RBP12.23□□□□□ -0.45
VPS39-203ENST00000561797 C5orf30Q96GV9 206 aa12.23□□□□□ -0.45
VPS39-203ENST00000561797 TSNAXQ99598 290 aaKnown RBP12.23□□□□□ -0.45
VPS39-203ENST00000561797 GAB2Q9UQC2 676 aa12.23□□□□□ -0.45
VPS39-203ENST00000561797 A0A087WXM4 84 aa12.22□□□□□ -0.45
VPS39-203ENST00000561797 A0A1W2PN81 502 aa12.22□□□□□ -0.45
VPS39-203ENST00000561797 SLC25A17O43808 307 aa12.22□□□□□ -0.45
VPS39-203ENST00000561797 TNFAIP8O95379 198 aa12.22□□□□□ -0.45
VPS39-203ENST00000561797 CHRNA7P36544 502 aa12.22□□□□□ -0.45
VPS39-203ENST00000561797 PITPNAQ00169 270 aa12.22□□□□□ -0.45
VPS39-203ENST00000561797 SLC25A38Q96DW6 304 aa12.22□□□□□ -0.45
VPS39-203ENST00000561797 OR5B12Q96R08 314 aa12.22□□□□□ -0.45
VPS39-203ENST00000561797 FAM103A1Q9BTL3 118 aaKnown RBP12.22□□□□□ -0.45
VPS39-203ENST00000561797 VCX3AQ9NNX9 186 aa12.22□□□□□ -0.45
VPS39-203ENST00000561797 TRAV18A0A075B6X5 111 aa12.21□□□□□ -0.45
VPS39-203ENST00000561797 AIREO43918 545 aa12.21□□□□□ -0.45
VPS39-203ENST00000561797 SSX5O60225 188 aa12.21□□□□□ -0.45
VPS39-203ENST00000561797 CA2P00918 260 aa12.21□□□□□ -0.45
VPS39-203ENST00000561797 IGLV1-40P01703 118 aa12.21□□□□□ -0.45
VPS39-203ENST00000561797 EGR2P11161 476 aaPredicted RBP12.21□□□□□ -0.45
VPS39-203ENST00000561797 KRTAP10-11P60412 298 aa12.21□□□□□ -0.45
VPS39-203ENST00000561797 LSM3P62310 102 aaKnown RBP12.21□□□□□ -0.45
VPS39-203ENST00000561797 PPP1R27Q86WC6 154 aa12.21□□□□□ -0.45
VPS39-203ENST00000561797 ZNF491Q8N8L2 437 aa12.21□□□□□ -0.45
VPS39-203ENST00000561797 MINDY2Q8NBR6 621 aa12.21□□□□□ -0.45
VPS39-203ENST00000561797 BVESQ8NE79 360 aa12.21□□□□□ -0.45
VPS39-203ENST00000561797 CASTOR1Q8WTX7 329 aa12.21□□□□□ -0.45
VPS39-203ENST00000561797 C4orf3Q8WVX3 66 aa12.21□□□□□ -0.45
VPS39-203ENST00000561797 DCSTAMPQ9H295 470 aa12.21□□□□□ -0.45
VPS39-203ENST00000561797 GNB4Q9HAV0 340 aa12.21□□□□□ -0.45
VPS39-203ENST00000561797 TPSG1Q9NRR2 321 aa12.21□□□□□ -0.45
VPS39-203ENST00000561797 NUBP2Q9Y5Y2 271 aa12.21□□□□□ -0.45
VPS39-203ENST00000561797 ETV7Q9Y603 341 aa12.21□□□□□ -0.45
VPS39-203ENST00000561797 SPDEFO95238 335 aa12.2□□□□□ -0.46
VPS39-203ENST00000561797 NFYAP23511 347 aaPredicted RBP12.2□□□□□ -0.46
VPS39-203ENST00000561797 RAB9AP51151 201 aa12.2□□□□□ -0.46
VPS39-203ENST00000561797 SCAND1P57086 179 aa12.2□□□□□ -0.46
VPS39-203ENST00000561797 TMEM267Q0VDI3 215 aaPredicted RBP12.2□□□□□ -0.46
VPS39-203ENST00000561797 CBX3Q13185 183 aa12.2□□□□□ -0.46
VPS39-203ENST00000561797 KIAA0141Q14154 515 aaPredicted RBP12.2□□□□□ -0.46
VPS39-203ENST00000561797 TIMM50Q3ZCQ8 353 aa12.2□□□□□ -0.46
VPS39-203ENST00000561797 UNQ5815/PRO19632Q6UWF5 114 aa12.2□□□□□ -0.46
VPS39-203ENST00000561797 OR11H1Q8NG94 326 aa12.2□□□□□ -0.46
VPS39-203ENST00000561797 MYOZ3Q8TDC0 251 aa12.2□□□□□ -0.46
VPS39-203ENST00000561797 DPF1Q92782 380 aa12.2□□□□□ -0.46
VPS39-203ENST00000561797 YIPF6Q96EC8 236 aa12.2□□□□□ -0.46
VPS39-203ENST00000561797 UBE2E2Q96LR5 201 aa12.2□□□□□ -0.46
VPS39-203ENST00000561797 MCRIP2Q9BUT9 160 aaKnown RBP12.2□□□□□ -0.46
VPS39-203ENST00000561797 GPR61Q9BZJ8 451 aa12.2□□□□□ -0.46
VPS39-203ENST00000561797 SOX15O60248 233 aa12.19□□□□□ -0.46
VPS39-203ENST00000561797 IGLV2-23P01705 113 aa12.19□□□□□ -0.46
VPS39-203ENST00000561797 CTXN2P0C2S0 81 aa12.19□□□□□ -0.46
VPS39-203ENST00000561797 LUMP51884 338 aaPredicted RBP12.19□□□□□ -0.46
VPS39-203ENST00000561797 CRIP2P52943 208 aaPredicted RBP12.19□□□□□ -0.46
VPS39-203ENST00000561797 RTL8BQ17RB0 113 aa12.19□□□□□ -0.46
VPS39-203ENST00000561797 C19orf54Q5BKX5 351 aa12.19□□□□□ -0.46
VPS39-203ENST00000561797 CNIH2Q6PI25 160 aa12.19□□□□□ -0.46
VPS39-203ENST00000561797 ZNF562Q6V9R5 426 aa12.19□□□□□ -0.46
VPS39-203ENST00000561797 LFNGQ8NES3 379 aa12.19□□□□□ -0.46
VPS39-203ENST00000561797 HARBI1Q96MB7 349 aa12.19□□□□□ -0.46
VPS39-203ENST00000561797 DIABLOQ9NR28 239 aa12.19□□□□□ -0.46
VPS39-203ENST00000561797 ANXA10Q9UJ72 324 aa12.19□□□□□ -0.46
VPS39-203ENST00000561797 FOXA2Q9Y261 457 aaPredicted RBP12.19□□□□□ -0.46
VPS39-203ENST00000561797 VSIG4Q9Y279 399 aa12.19□□□□□ -0.46
VPS39-203ENST00000561797 OR2W1Q9Y3N9 320 aa12.19□□□□□ -0.46
VPS39-203ENST00000561797 LINC00473A8K010 186 aa12.18□□□□□ -0.46
VPS39-203ENST00000561797 SHOXO15266 292 aa12.18□□□□□ -0.46
VPS39-203ENST00000561797 CNIH1O95406 144 aa12.18□□□□□ -0.46
VPS39-203ENST00000561797 FCER2P06734 321 aa12.18□□□□□ -0.46
VPS39-203ENST00000561797 PTHLHP12272 177 aa12.18□□□□□ -0.46
VPS39-203ENST00000561797 DUTP33316 252 aaKnown RBP12.18□□□□□ -0.46
VPS39-203ENST00000561797 RPS19P39019 145 aaKnown RBP12.18□□□□□ -0.46
VPS39-203ENST00000561797 LGALS7P47929 136 aa12.18□□□□□ -0.46
VPS39-203ENST00000561797 GNB1P62873 340 aa12.18□□□□□ -0.46
VPS39-203ENST00000561797 TAGLNQ01995 201 aaKnown RBP12.18□□□□□ -0.46
VPS39-203ENST00000561797 PJVKQ0ZLH3 352 aa12.18□□□□□ -0.46
VPS39-203ENST00000561797 FXYD3Q14802 87 aa12.18□□□□□ -0.46
VPS39-203ENST00000561797 TMEM177Q53S58 311 aa12.18□□□□□ -0.46
VPS39-203ENST00000561797 ACTBL2Q562R1 376 aa12.18□□□□□ -0.46
VPS39-203ENST00000561797 OR5M8Q8NGP6 311 aa12.18□□□□□ -0.46
VPS39-203ENST00000561797 GRPEL2Q8TAA5 225 aa12.18□□□□□ -0.46
VPS39-203ENST00000561797 ARPC1AQ92747 370 aa12.18□□□□□ -0.46
VPS39-203ENST00000561797 ADTRPQ96IZ2 230 aa12.18□□□□□ -0.46
VPS39-203ENST00000561797 MS4A10Q96PG2 267 aa12.18□□□□□ -0.46
VPS39-203ENST00000561797 SPATA2Q9UM82 520 aa12.18□□□□□ -0.46
VPS39-203ENST00000561797 I3L521 148 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms