RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 PACRGLQ8N7B6 248 aa12.48□□□□□ -0.41
CLN3-208ENST00000561505 DRAXINQ8NBI3 349 aaPredicted RBP12.48□□□□□ -0.41
CLN3-208ENST00000561505 OR2K2Q8NGT1 345 aa12.48□□□□□ -0.41
CLN3-208ENST00000561505 USMG5Q96IX5 58 aa12.48□□□□□ -0.41
CLN3-208ENST00000561505 C8orf4Q9NR00 106 aa12.48□□□□□ -0.41
CLN3-208ENST00000561505 PLEKHJ1Q9NW61 149 aa12.48□□□□□ -0.41
CLN3-208ENST00000561505 C13orf42A0A1B0GVH6 325 aa12.47□□□□□ -0.41
CLN3-208ENST00000561505 SOCS1O15524 211 aa12.47□□□□□ -0.41
CLN3-208ENST00000561505 IFNA6P05013 189 aa12.47□□□□□ -0.41
CLN3-208ENST00000561505 SCTP09683 121 aa12.47□□□□□ -0.41
CLN3-208ENST00000561505 SRMP19623 302 aa12.47□□□□□ -0.41
CLN3-208ENST00000561505 PJVKQ0ZLH3 352 aa12.47□□□□□ -0.41
CLN3-208ENST00000561505 DYRK1AQ13627 763 aa12.47□□□□□ -0.41
CLN3-208ENST00000561505 OR5T1Q8NG75 326 aa12.47□□□□□ -0.41
CLN3-208ENST00000561505 CYGBQ8WWM9 190 aa12.47□□□□□ -0.41
CLN3-208ENST00000561505 HDHD3Q9BSH5 251 aaPredicted RBP12.47□□□□□ -0.41
CLN3-208ENST00000561505 RSRP1Q9BUV0 290 aa12.47□□□□□ -0.41
CLN3-208ENST00000561505 HIPK2Q9H2X6 1198 aa12.47□□□□□ -0.41
CLN3-208ENST00000561505 PEF1Q9UBV8 284 aaKnown RBP12.47□□□□□ -0.41
CLN3-208ENST00000561505 AK3Q9UIJ7 227 aa12.47□□□□□ -0.41
CLN3-208ENST00000561505 SLC25A17O43808 307 aa12.46□□□□□ -0.41
CLN3-208ENST00000561505 OR2A4O95047 310 aa12.46□□□□□ -0.41
CLN3-208ENST00000561505 UCHL1P09936 223 aa12.46□□□□□ -0.41
CLN3-208ENST00000561505 SYNJ2BPP57105 145 aa12.46□□□□□ -0.41
CLN3-208ENST00000561505 TMEM177Q53S58 311 aa12.46□□□□□ -0.41
CLN3-208ENST00000561505 LCN12Q6JVE5 192 aa12.46□□□□□ -0.41
CLN3-208ENST00000561505 OR6M1Q8NGM8 313 aa12.46□□□□□ -0.41
CLN3-208ENST00000561505 IL17DQ8TAD2 202 aa12.46□□□□□ -0.41
CLN3-208ENST00000561505 KCNK15Q9H427 330 aa12.46□□□□□ -0.41
CLN3-208ENST00000561505 CHMP1AQ9HD42 196 aaPredicted RBP12.46□□□□□ -0.41
CLN3-208ENST00000561505 ZNF221Q9UK13 617 aa12.46□□□□□ -0.41
CLN3-208ENST00000561505 ANKRD34BA5PLL1 514 aa12.45□□□□□ -0.42
CLN3-208ENST00000561505 IZUMO1RA6ND01 250 aa12.45□□□□□ -0.42
CLN3-208ENST00000561505 MYL12BO14950 172 aa12.45□□□□□ -0.42
CLN3-208ENST00000561505 RBMXL2O75526 392 aaKnown RBP12.45□□□□□ -0.42
CLN3-208ENST00000561505 DIRAS3O95661 229 aa12.45□□□□□ -0.42
CLN3-208ENST00000561505 TRBV12-3P01733 135 aa12.45□□□□□ -0.42
CLN3-208ENST00000561505 APOA2P02652 100 aa12.45□□□□□ -0.42
CLN3-208ENST00000561505 TAGLNQ01995 201 aaKnown RBP12.45□□□□□ -0.42
CLN3-208ENST00000561505 LAX1Q8IWV1 398 aa12.45□□□□□ -0.42
CLN3-208ENST00000561505 DHRSXQ8N5I4 330 aa12.45□□□□□ -0.42
CLN3-208ENST00000561505 GRPEL2Q8TAA5 225 aa12.45□□□□□ -0.42
CLN3-208ENST00000561505 GFI1Q99684 422 aa12.45□□□□□ -0.42
CLN3-208ENST00000561505 C12orf4Q9NQ89 552 aa12.45□□□□□ -0.42
CLN3-208ENST00000561505 ADAM30Q9UKF2 790 aa12.45□□□□□ -0.42
CLN3-208ENST00000561505 LSM2Q9Y333 95 aaKnown RBP12.45□□□□□ -0.42
CLN3-208ENST00000561505 SHISA3A0PJX4 238 aa12.44□□□□□ -0.42
CLN3-208ENST00000561505 GNAO1P09471 354 aa12.44□□□□□ -0.42
CLN3-208ENST00000561505 TATDN3Q17R31 274 aa12.44□□□□□ -0.42
CLN3-208ENST00000561505 GTSCR1Q86UQ5 136 aa12.44□□□□□ -0.42
CLN3-208ENST00000561505 URM1Q9BTM9 101 aaKnown RBP12.44□□□□□ -0.42
CLN3-208ENST00000561505 SLC35D1Q9NTN3 355 aa12.44□□□□□ -0.42
CLN3-208ENST00000561505 RDH8Q9NYR8 311 aa12.44□□□□□ -0.42
CLN3-208ENST00000561505 ALMS1Q8TCU4 4167 aa12.43□□□□□ -0.42
CLN3-208ENST00000561505 TRBV9A0A0B4J1U6 114 aa12.43□□□□□ -0.42
CLN3-208ENST00000561505 SRRM4A7MD48 611 aaKnown RBP12.43□□□□□ -0.42
CLN3-208ENST00000561505 ZNF785A8K8V0 405 aa12.43□□□□□ -0.42
CLN3-208ENST00000561505 TRDCB7Z8K6 153 aa12.43□□□□□ -0.42
CLN3-208ENST00000561505 SLC17A2O00624 439 aa12.43□□□□□ -0.42
CLN3-208ENST00000561505 AIREO43918 545 aa12.43□□□□□ -0.42
CLN3-208ENST00000561505 SERPINB10P48595 397 aa12.43□□□□□ -0.42
CLN3-208ENST00000561505 RBM48Q5RL73 367 aaKnown RBP12.43□□□□□ -0.42
CLN3-208ENST00000561505 AHSA2Q719I0 299 aa12.43□□□□□ -0.42
CLN3-208ENST00000561505 ADAD2Q8NCV1 583 aaKnown RBP12.43□□□□□ -0.42
CLN3-208ENST00000561505 BVESQ8NE79 360 aa12.43□□□□□ -0.42
CLN3-208ENST00000561505 SETD6Q8TBK2 473 aa12.43□□□□□ -0.42
CLN3-208ENST00000561505 C5orf30Q96GV9 206 aa12.43□□□□□ -0.42
CLN3-208ENST00000561505 CABLES2Q9BTV7 478 aa12.43□□□□□ -0.42
CLN3-208ENST00000561505 PECRQ9BY49 303 aa12.43□□□□□ -0.42
CLN3-208ENST00000561505 ZNF355PQ9NSJ1 428 aa12.43□□□□□ -0.42
CLN3-208ENST00000561505 DMRT1Q9Y5R6 373 aa12.43□□□□□ -0.42
CLN3-208ENST00000561505 JTBO76095 146 aa12.42□□□□□ -0.42
CLN3-208ENST00000561505 CNIH1O95406 144 aa12.42□□□□□ -0.42
CLN3-208ENST00000561505 HSD17B12Q53GQ0 312 aa12.42□□□□□ -0.42
CLN3-208ENST00000561505 PLAC9Q5JTB6 97 aa12.42□□□□□ -0.42
CLN3-208ENST00000561505 C8orf59Q8N0T1 100 aaPredicted RBP12.42□□□□□ -0.42
CLN3-208ENST00000561505 OR4A4PQ8NGN8 299 aa12.42□□□□□ -0.42
CLN3-208ENST00000561505 DDB2Q92466 427 aa12.42□□□□□ -0.42
CLN3-208ENST00000561505 SNAPC3Q92966 411 aa12.42□□□□□ -0.42
CLN3-208ENST00000561505 TUBA4BQ9H853 241 aa12.42□□□□□ -0.42
CLN3-208ENST00000561505 SDHAF2Q9NX18 166 aa12.42□□□□□ -0.42
CLN3-208ENST00000561505 CEPT1Q9Y6K0 416 aa12.42□□□□□ -0.42
CLN3-208ENST00000561505 TRBV6-7A0A0A0MS04 114 aa12.41□□□□□ -0.42
CLN3-208ENST00000561505 M0R1X1 148 aa12.41□□□□□ -0.42
CLN3-208ENST00000561505 BMPR1BO00238 502 aa12.41□□□□□ -0.42
CLN3-208ENST00000561505 CDK1P06493 297 aa12.41□□□□□ -0.42
CLN3-208ENST00000561505 TMEM91Q6ZNR0 172 aa12.41□□□□□ -0.42
CLN3-208ENST00000561505 CEACAM19Q7Z692 300 aa12.41□□□□□ -0.42
CLN3-208ENST00000561505 TEX45Q8NA69 505 aa12.41□□□□□ -0.42
CLN3-208ENST00000561505 ARHGAP5-AS1Q96IT6 56 aa12.41□□□□□ -0.42
CLN3-208ENST00000561505 TMED9Q9BVK6 235 aa12.41□□□□□ -0.42
CLN3-208ENST00000561505 ZC4H2Q9NQZ6 224 aa12.41□□□□□ -0.42
CLN3-208ENST00000561505 KCNK7Q9Y2U2 307 aa12.41□□□□□ -0.42
CLN3-208ENST00000561505 OR9G9P0C7N8 305 aa12.4□□□□□ -0.42
CLN3-208ENST00000561505 RRASP10301 218 aa12.4□□□□□ -0.42
CLN3-208ENST00000561505 UBE2KP61086 200 aa12.4□□□□□ -0.42
CLN3-208ENST00000561505 IRF3Q14653 427 aa12.4□□□□□ -0.42
CLN3-208ENST00000561505 SPHARQ15513 63 aa12.4□□□□□ -0.42
CLN3-208ENST00000561505 RPEL1Q2QD12 228 aa12.4□□□□□ -0.42
CLN3-208ENST00000561505 BPIFB6Q8NFQ5 453 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms