RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 ZNF787Q6DD87 383 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 Q6ZS49 121 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 OR8G5Q8NG78 346 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 SNIP1Q8TAD8 396 aaKnown RBP9.59□□□□□ -0.87
CUX1-218ENST00000560541 MEGF9Q9H1U4 602 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 AURKAIP1Q9NWT8 199 aaPredicted RBP9.59□□□□□ -0.87
CUX1-218ENST00000560541 NTN3O00634 580 aaPredicted RBP9.59□□□□□ -0.87
CUX1-218ENST00000560541 WDR1O75083 606 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 IGKV1-39P01597 117 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 IGKV1D-39P04432 117 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 PSG1P11464 419 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 ZNF726P1Q15940 193 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 ZNF324BQ6AW86 544 aaPredicted RBP9.59□□□□□ -0.87
CUX1-218ENST00000560541 SAXO1Q8IYX7 474 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 ZNF596Q8TC21 504 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 OR6C3Q9NZP0 311 aa9.59□□□□□ -0.87
CUX1-218ENST00000560541 USF3Q68DE3 2245 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 FAM90A10PA6NDY2 464 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 FAM90A18PA6NE21 464 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 FAM90A16PA6NEW6 464 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 FAM90A20PA6NIJ5 464 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 FAM90A8PA6NJQ4 464 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 FAM90A7PA6NKC0 464 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 FAM90A22PA8MWA6 464 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 FAM90A12PA8MX19 464 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 FAM90A5PA8MXJ8 464 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 FAM90A23PA8MXZ1 464 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 HBE1P02100 147 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 FAM90A15PP0C7V4 464 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 FAM90A13PP0C7W8 464 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 FAM90A14PP0C7W9 464 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 FAM90A24PP0C7X0 464 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 CA6P23280 308 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 LPAL2Q16609 132 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 FAM90A2PQ658T7 463 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 SP5Q6BEB4 398 aaPredicted RBP9.58□□□□□ -0.88
CUX1-218ENST00000560541 TMEM256Q8N2U0 113 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 SCGB1C1Q8TD33 95 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 VN1R17PQ8TDU5 208 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 APOBEC3DQ96AK3 386 aaPredicted RBP9.58□□□□□ -0.88
CUX1-218ENST00000560541 APH1AQ96BI3 265 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 RPUSD4Q96CM3 377 aaKnown RBP9.58□□□□□ -0.88
CUX1-218ENST00000560541 PLK3Q9H4B4 646 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 A0A1W2PR80 420 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 KIAA1324LA8MWY0 1029 aaPredicted RBP9.58□□□□□ -0.88
CUX1-218ENST00000560541 SIRPB1O00241 398 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 PDGFBP01127 241 aaPredicted RBP9.58□□□□□ -0.88
CUX1-218ENST00000560541 SPANXN5Q5MJ07 72 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 DPPA3Q6W0C5 159 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 ZNF738Q8NE65 137 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 ABHD14BQ96IU4 210 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 VAMP8Q9BV40 100 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 PSENENQ9NZ42 101 aa9.58□□□□□ -0.88
CUX1-218ENST00000560541 A0A087WWC5 75 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 DUXBA0A1W2PPF3 345 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 CLDN34H7C241 214 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 CTXN2P0C2S0 81 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 S100GP29377 79 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 MAGEA5P43359 124 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 COMPP49747 757 aaPredicted RBP9.57□□□□□ -0.88
CUX1-218ENST00000560541 RPS16P62249 146 aaKnown RBP9.57□□□□□ -0.88
CUX1-218ENST00000560541 CT55Q8WUE5 264 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 C12orf49Q9H741 205 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 ZNF703Q9H7S9 590 aaPredicted RBP9.57□□□□□ -0.88
CUX1-218ENST00000560541 DLL3Q9NYJ7 618 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 MED13Q9UHV7 2174 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 CEBPZOSA8MTT3 80 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 SYNGR2O43760 224 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 GNG7O60262 68 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 NUPR1O60356 82 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 TNFSF13O75888 250 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 IGKV1-5P01602 117 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 NBEAP1P0C6P0 100 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 BCL2P10415 239 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 LINC01551Q86U37 167 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 HAPLN4Q86UW8 402 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 MCEMP1Q8IX19 187 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 FAM58AQ8N1B3 248 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 OR10V1Q8NGI7 309 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 TXN2Q99757 166 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 PLA2G3Q9NZ20 509 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 PCSK5Q92824 1860 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 IGLV2-14P01704 120 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 CCKARP32238 428 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 H1FOOQ8IZA3 346 aaPredicted RBP9.57□□□□□ -0.88
CUX1-218ENST00000560541 TMEM105Q8N8V8 129 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 OR5P3Q8WZ94 311 aa9.57□□□□□ -0.88
CUX1-218ENST00000560541 PRR14LQ5THK1 2151 aa9.56□□□□□ -0.88
CUX1-218ENST00000560541 A0A1B0GU03 582 aa9.56□□□□□ -0.88
CUX1-218ENST00000560541 UBE2L5PA0A1B0GUS4 154 aa9.56□□□□□ -0.88
CUX1-218ENST00000560541 ANKRD30BLA7E2S9 258 aa9.56□□□□□ -0.88
CUX1-218ENST00000560541 DEGS1O15121 323 aa9.56□□□□□ -0.88
CUX1-218ENST00000560541 LHX2P50458 406 aa9.56□□□□□ -0.88
CUX1-218ENST00000560541 ZXDAP98168 799 aa9.56□□□□□ -0.88
CUX1-218ENST00000560541 HOXA4Q00056 320 aaPredicted RBP9.56□□□□□ -0.88
CUX1-218ENST00000560541 OR5A2Q8NGI9 324 aa9.56□□□□□ -0.88
CUX1-218ENST00000560541 RAB40CQ96S21 281 aa9.56□□□□□ -0.88
CUX1-218ENST00000560541 HIPK2Q9H2X6 1198 aa9.56□□□□□ -0.88
CUX1-218ENST00000560541 CDH20Q9HBT6 801 aa9.56□□□□□ -0.88
CUX1-218ENST00000560541 SAP30O75446 220 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms