RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 LINC00205P59089 165 aa8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 RPS25P62851 125 aaKnown RBP8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 MRPS15P82914 257 aaKnown RBP8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 TPBGQ13641 420 aa8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 FXYD3Q14802 87 aa8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 SRSF7Q16629 238 aaKnown RBP eCLIP8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 TMEM91Q6ZNR0 172 aa8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 OR56B1Q8NGI3 324 aa8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 GRPEL2Q8TAA5 225 aa8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 MUC7Q8TAX7 377 aa8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 ZMAT4Q9H898 229 aa8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 SLC35D1Q9NTN3 355 aa8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 RDH8Q9NYR8 311 aa8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 TPRKBQ9Y3C4 175 aa8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 IGKV1-6A0A0C4DH72 117 aa8.51□□□□□ -1.05
CCDC88C-213ENST00000557455 C13orf42A0A1B0GVH6 325 aa8.51□□□□□ -1.05
CCDC88C-213ENST00000557455 TRDCB7Z8K6 153 aa8.51□□□□□ -1.05
CCDC88C-213ENST00000557455 H3BUA1 57 aa8.51□□□□□ -1.05
CCDC88C-213ENST00000557455 DENRO43583 198 aaKnown RBP8.51□□□□□ -1.05
CCDC88C-213ENST00000557455 CALRP27797 417 aaKnown RBP8.51□□□□□ -1.05
CCDC88C-213ENST00000557455 SERPINB10P48595 397 aa8.51□□□□□ -1.05
CCDC88C-213ENST00000557455 C2orf76Q3KRA6 126 aa8.51□□□□□ -1.05
CCDC88C-213ENST00000557455 ANKRD13BQ86YJ7 626 aa8.51□□□□□ -1.05
CCDC88C-213ENST00000557455 POC5Q8NA72 575 aa8.51□□□□□ -1.05
CCDC88C-213ENST00000557455 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.51□□□□□ -1.05
CCDC88C-213ENST00000557455 OR5T1Q8NG75 326 aa8.51□□□□□ -1.05
CCDC88C-213ENST00000557455 OR4A4PQ8NGN8 299 aa8.51□□□□□ -1.05
CCDC88C-213ENST00000557455 FAM3DQ96BQ1 224 aa8.51□□□□□ -1.05
CCDC88C-213ENST00000557455 RSRP1Q9BUV0 290 aa8.51□□□□□ -1.05
CCDC88C-213ENST00000557455 RANGRFQ9HD47 186 aaPredicted RBP8.51□□□□□ -1.05
CCDC88C-213ENST00000557455 STUB1Q9UNE7 303 aa8.51□□□□□ -1.05
CCDC88C-213ENST00000557455 A0A0G2JLM5 398 aa8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 BET1O15155 118 aa8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 FABP7O15540 132 aa8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 RGS10O43665 173 aa8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 CD3GP09693 182 aa8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 ZP3P21754 424 aa8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 LGALS7P47929 136 aa8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 PSMD7P51665 324 aa8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 MLLT11Q13015 90 aaPredicted RBP8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 CBX3Q13185 183 aa8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 PLAC9Q5JTB6 97 aa8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 CASC10Q5T4H9 136 aa8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 HES5Q5TA89 166 aa8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 HAPLN4Q86UW8 402 aa8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 CCDC90BQ9GZT6 254 aa8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 OR2D2Q9H210 308 aa8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 DUSP21Q9H596 190 aa8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 RAB22AQ9UL26 194 aa8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 V9GY05 133 aa8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 DYNC2H1Q8NCM8 4307 aaKnown RBP8.5□□□□□ -1.05
CCDC88C-213ENST00000557455 TMEM272A0A1B0GTI8 110 aa8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 LDLRAD4O15165 306 aa8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 IGLV1-51P01701 117 aa8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 IGLV2-23P01705 113 aa8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 AQP4P55087 323 aa8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 SSBP2P81877 361 aaPredicted RBP8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 FABP5Q01469 135 aa8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 TAGLNQ01995 201 aaKnown RBP8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 PJVKQ0ZLH3 352 aa8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 MOGAT2Q3SYC2 334 aa8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 IGSF11Q5DX21 431 aa8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 OR10J5Q8NHC4 309 aa8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 RAB3CQ96E17 227 aa8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 HARBI1Q96MB7 349 aa8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 TMEM68Q96MH6 324 aa8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 MGLLQ99685 303 aa8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 ACOT13Q9NPJ3 140 aa8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 SDHAF2Q9NX18 166 aa8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 LYSTQ99698 3801 aa8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 CSMD3Q7Z407 3707 aa8.49□□□□□ -1.05
CCDC88C-213ENST00000557455 TRBV6-7A0A0A0MS04 114 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 ANKRD34BA5PLL1 514 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 PDCD5O14737 125 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 SHOXO15266 292 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 CRYGBP07316 175 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 FCGR3AP08637 254 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 GSTT2P0CG29 244 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 GSTT2BP0CG30 244 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 IGHV4-30-4P0DP06 118 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 GADD45AP24522 165 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 PLA2G7Q13093 441 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 RTL8BQ17RB0 113 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 TMEM177Q53S58 311 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 IZUMO2Q6UXV1 221 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 PRSS48Q7RTY5 328 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 SGPP2Q8IWX5 399 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 Q8N1Y9 231 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 BVESQ8NE79 360 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 OR10R2Q8NGX6 335 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 NRG4Q8WWG1 115 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 PHB2Q99623 299 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 CABLES2Q9BTV7 478 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 TINAGL1Q9GZM7 467 aaPredicted RBP8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 PALMDQ9NP74 551 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 COA4Q9NYJ1 87 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 KCNK7Q9Y2U2 307 aa8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 RBM7Q9Y580 266 aaKnown RBP8.48□□□□□ -1.05
CCDC88C-213ENST00000557455 A0A075B6Q4 140 aa8.47□□□□□ -1.05
CCDC88C-213ENST00000557455 BRI3O95415 125 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms