RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	ZNF525	Q8N782	197 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	TMEM178A	Q8NBL3	297 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	RAB24	Q969Q5	203 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	MIEN1	Q9BRT3	115 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	HES7	Q9BYE0	225 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	UQCR10	Q9UDW1	63 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	IGKV1-27	A0A075B6S5	117 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	hADV38S2	A0JD32	116 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	MARCH11	A6NNE9	402 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	RHBDL1	O75783	438 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	EFEMP2	O95967	443 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	C1QTNF9	P0C862	333 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	CCL4	P13236	92 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	ZNF826P	Q6ZT77	177 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	MOGAT3	Q86VF5	341 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	ST6GALNAC3	Q8NDV1	305 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	ZNF738	Q8NE65	137 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	PRSS3P2	Q8NHM4	247 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	EDARADD	Q8WWZ3	215 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	FER1L6-AS2	Q96M78	137 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	PPP1R14D	Q9NXH3	145 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	DLL3	Q9NYJ7	618 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	ONECUT1	Q9UBC0	465 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	PGPEP1L	A6NFU8	196 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	IFITM10	A6NMD0	228 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	CSN1S1	P47710	185 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	DNLZ	Q5SXM8	178 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	DOLPP1	Q86YN1	238 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	LURAP1L	Q8IV03	231 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	MUC15	Q8N387	334 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	OR5A2	Q8NGI9	324 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	OR1L4	Q8NGR5	311 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	OR5P3	Q8WZ94	311 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	LSM10	Q969L4	123 aa	Known RBP	4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	TMEM45B	Q96B21	275 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	TMEM56	Q96MV1	263 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	SSBP3	Q9BWW4	388 aa	Predicted RBP	4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	HS3ST3B1	Q9Y662	390 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005		A0A1B0GW64	132 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	RAMP3	O60896	148 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	SERF1A	O75920	110 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	CRYBB3	P26998	211 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	BHLHA15	Q7RTS1	189 aa	Predicted RBP	4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	MOB3B	Q86TA1	216 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	WFDC8	Q8IUA0	241 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	CRIPAK	Q8N1N5	446 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	OR2M7	Q8NG81	312 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	TTTY12	Q9BZ98	90 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	OR6C3	Q9NZP0	311 aa		4.25	□□□□□ -1.73
SYNE2-223	ENST00000557005	HPRT1	P00492	218 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	CA2	P00918	260 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	REG1B	P48304	166 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	BPIFA4P	Q86YQ2	179 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	CALHM1	Q8IU99	346 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	FAM19A2	Q8N3H0	131 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	SGK494	Q96LW2	274 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	NDUFAF3	Q9BU61	184 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	RPRM	Q9NS64	109 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	IL36B	Q9NZH7	164 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	KLF13	Q9Y2Y9	288 aa	Predicted RBP	4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	TMEM56-RWDD3	S4R434	201 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	TNFSF15	O95150	251 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	PLAU	P00749	431 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	CT45A10	P0DMU9	189 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	CSRP2	Q16527	193 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	C1orf53	Q5VUE5	145 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	BMPER	Q8N8U9	685 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	OR2Y1	Q8NGV0	311 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	OR4S2	Q8NH73	311 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	RND1	Q92730	232 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	RAB37	Q96AX2	223 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	HES4	Q9HCC6	221 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	PNRC2	Q9NPJ4	139 aa	Known RBP	4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	ASCL3	Q9NQ33	180 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	HSPB8	Q9UJY1	196 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	F11R	Q9Y624	299 aa	Known RBP	4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005		B4E171	279 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	SMPD2	O60906	423 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	FOXH1	O75593	365 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	IL6R	P08887	468 aa	Predicted RBP	4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	PRB4	P10163	310 aa	Predicted RBP	4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	COX6A1	P12074	109 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	RIPPLY3	P57055	190 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	ARF6	P62330	175 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	PLAUR	Q03405	335 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	TNXA	Q16473	311 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	HIST3H3	Q16695	136 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	RPL39P5	Q59GN2	51 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	CENPW	Q5EE01	88 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	C10orf128	Q5T292	105 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	FAM166A	Q6J272	317 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	UNQ6494/PRO21346	Q6UXR6	183 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	MMD2	Q8IY49	270 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	DRAM1	Q8N682	238 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	STPG3	Q8N7X2	389 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	GRAMD2B	Q96HH9	432 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	ALKBH7	Q9BT30	221 aa	Predicted RBP	4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	PAXX	Q9BUH6	204 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	DNAJC4	Q9NNZ3	241 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	WBP1L	Q9NX94	342 aa		4.24	□□□□□ -1.73

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