RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 IGKV1D-13A0A0B4J2D9 117 aa10.76□□□□□ -0.69
SHMT2-219ENST00000555563 MEIS3P1A6NDR6 274 aa10.76□□□□□ -0.69
SHMT2-219ENST00000555563 SPDEFO95238 335 aa10.76□□□□□ -0.69
SHMT2-219ENST00000555563 IGKV1-13P0DP09 117 aa10.76□□□□□ -0.69
SHMT2-219ENST00000555563 LUMP51884 338 aaPredicted RBP10.76□□□□□ -0.69
SHMT2-219ENST00000555563 ARPC4P59998 168 aa10.76□□□□□ -0.69
SHMT2-219ENST00000555563 PSG5Q15238 335 aa10.76□□□□□ -0.69
SHMT2-219ENST00000555563 TEX38Q6PEX7 206 aa10.76□□□□□ -0.69
SHMT2-219ENST00000555563 LCNL1Q6ZST4 164 aa10.76□□□□□ -0.69
SHMT2-219ENST00000555563 GPR141Q7Z602 305 aa10.76□□□□□ -0.69
SHMT2-219ENST00000555563 ZNF645Q8N7E2 425 aa10.76□□□□□ -0.69
SHMT2-219ENST00000555563 SNAPC3Q92966 411 aa10.76□□□□□ -0.69
SHMT2-219ENST00000555563 FLYWCH2Q96CP2 140 aaKnown RBP10.76□□□□□ -0.69
SHMT2-219ENST00000555563 TSNAXQ99598 290 aaKnown RBP10.76□□□□□ -0.69
SHMT2-219ENST00000555563 RNF5Q99942 180 aa10.76□□□□□ -0.69
SHMT2-219ENST00000555563 TPSG1Q9NRR2 321 aa10.76□□□□□ -0.69
SHMT2-219ENST00000555563 COMMD3Q9UBI1 195 aa10.76□□□□□ -0.69
SHMT2-219ENST00000555563 METTL1Q9UBP6 276 aaKnown RBP10.76□□□□□ -0.69
SHMT2-219ENST00000555563 VWFP04275 2813 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 NUDT19A8MXV4 375 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 G3V318 75 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 SLC25A17O43808 307 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 TUSC2O75896 110 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 IGHG4P01861 327 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 HLA-DQB1P01920 261 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 PF4P02776 101 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 RPLP1P05386 114 aaKnown RBP10.75□□□□□ -0.69
SHMT2-219ENST00000555563 OR5H8P0DN80 308 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 DUTP33316 252 aaKnown RBP10.75□□□□□ -0.69
SHMT2-219ENST00000555563 CBX5P45973 191 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 THBS3P49746 956 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 RPS16P62249 146 aaKnown RBP10.75□□□□□ -0.69
SHMT2-219ENST00000555563 CX3CL1P78423 397 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 FOXE3Q13461 319 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 ETV3LQ6ZN32 361 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 C8orf86Q6ZUL3 223 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 RNF152Q8N8N0 203 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 BVESQ8NE79 360 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 KLHL30-AS1Q8NEE0 82 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 DDB2Q92466 427 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 HARBI1Q96MB7 349 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 FBXO7Q9Y3I1 522 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 WSB1Q9Y6I7 421 aa10.75□□□□□ -0.69
SHMT2-219ENST00000555563 TRAV41A0A0B4J266 112 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 LINC00473A8K010 186 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 G3V4G9 280 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 FCN1O00602 326 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 PLXNB1O43157 2135 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 HPGDSO60760 199 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 CA2P00918 260 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 IGLV2-14P01704 120 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 IGLV2-23P01705 113 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 APOA1P02647 267 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 ELANEP08246 267 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 PSMB8P28062 276 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 PPIFP30405 207 aaKnown RBP10.74□□□□□ -0.69
SHMT2-219ENST00000555563 RORCP51449 518 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 RTL8BQ17RB0 113 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 CXorf66Q5JRM2 361 aaPredicted RBP10.74□□□□□ -0.69
SHMT2-219ENST00000555563 SAMD5Q5TGI4 173 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 ACOT12Q8WYK0 555 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 ADTRPQ96IZ2 230 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 CLCC1Q96S66 551 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 IFT46Q9NQC8 304 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 ZFP57Q9NU63 452 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 NECAP2Q9NVZ3 263 aa10.74□□□□□ -0.69
SHMT2-219ENST00000555563 RBMX2Q9Y388 322 aaKnown RBP10.74□□□□□ -0.69
SHMT2-219ENST00000555563 AADACP22760 399 aa10.73□□□□□ -0.69
SHMT2-219ENST00000555563 FCGR2CP31995 323 aa10.73□□□□□ -0.69
SHMT2-219ENST00000555563 TAGLNQ01995 201 aaKnown RBP10.73□□□□□ -0.69
SHMT2-219ENST00000555563 CBX3Q13185 183 aa10.73□□□□□ -0.69
SHMT2-219ENST00000555563 ECSCRQ19T08 205 aa10.73□□□□□ -0.69
SHMT2-219ENST00000555563 TMEM177Q53S58 311 aa10.73□□□□□ -0.69
SHMT2-219ENST00000555563 C19orf54Q5BKX5 351 aa10.73□□□□□ -0.69
SHMT2-219ENST00000555563 ZNF660Q6AZW8 331 aaPredicted RBP10.73□□□□□ -0.69
SHMT2-219ENST00000555563 KCTD9Q7L273 389 aa10.73□□□□□ -0.69
SHMT2-219ENST00000555563 ZNF695Q8IW36 515 aa10.73□□□□□ -0.69
SHMT2-219ENST00000555563 ABHD5Q8WTS1 349 aa10.73□□□□□ -0.69
SHMT2-219ENST00000555563 CMTM3Q96MX0 182 aa10.73□□□□□ -0.69
SHMT2-219ENST00000555563 ANAPC10Q9UM13 185 aa10.73□□□□□ -0.69
SHMT2-219ENST00000555563 A3GALT2U3KPV4 340 aa10.73□□□□□ -0.69
SHMT2-219ENST00000555563 SRRM4A7MD48 611 aaKnown RBP10.72□□□□□ -0.69
SHMT2-219ENST00000555563 SHOXO15266 292 aa10.72□□□□□ -0.69
SHMT2-219ENST00000555563 SLC22A5O76082 557 aa10.72□□□□□ -0.69
SHMT2-219ENST00000555563 CRYZL1O95825 349 aa10.72□□□□□ -0.69
SHMT2-219ENST00000555563 PPYP01298 95 aa10.72□□□□□ -0.69
SHMT2-219ENST00000555563 RRASP10301 218 aa10.72□□□□□ -0.69
SHMT2-219ENST00000555563 EGR2P11161 476 aaPredicted RBP10.72□□□□□ -0.69
SHMT2-219ENST00000555563 ELK1P19419 428 aa10.72□□□□□ -0.69
SHMT2-219ENST00000555563 CD33P20138 364 aa10.72□□□□□ -0.69
SHMT2-219ENST00000555563 SLC6A1P30531 599 aa10.72□□□□□ -0.69
SHMT2-219ENST00000555563 LGALS7P47929 136 aa10.72□□□□□ -0.69
SHMT2-219ENST00000555563 CRIP2P52943 208 aaPredicted RBP10.72□□□□□ -0.69
SHMT2-219ENST00000555563 RPL30P62888 115 aaKnown RBP10.72□□□□□ -0.69
SHMT2-219ENST00000555563 BEAN1Q3B7T3 259 aa10.72□□□□□ -0.69
SHMT2-219ENST00000555563 OR2B11Q5JQS5 317 aa10.72□□□□□ -0.69
SHMT2-219ENST00000555563 OVCH2Q7RTZ1 564 aa10.72□□□□□ -0.69
SHMT2-219ENST00000555563 OR5AP2Q8NGF4 316 aa10.72□□□□□ -0.69
SHMT2-219ENST00000555563 MYOZ3Q8TDC0 251 aa10.72□□□□□ -0.69
SHMT2-219ENST00000555563 AP3S1Q92572 193 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms