RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 OR51J1Q9H342 316 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 GHITMQ9H3K2 345 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 DIABLOQ9NR28 239 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 SLC35D1Q9NTN3 355 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 KIAA1456Q9P272 454 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 COMMD3Q9UBI1 195 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 ANXA10Q9UJ72 324 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 A3GALT2U3KPV4 340 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 TGP01266 2768 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 TNCP24821 2201 aa9.07□□□□□ -0.96
CCDC88C-208ENST00000554165 SRRM4A7MD48 611 aaKnown RBP9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 XRCC3O43542 346 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 SLC25A17O43808 307 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 IGLV2-14P01704 120 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 IGLV2-23P01705 113 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 IGF1P05019 195 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 IGLL1P15814 213 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 VDAC1P21796 283 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 ALDH3B2P48448 385 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 TAS2R20P59543 309 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 SLC35B1P78383 322 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 PLGLAQ15195 96 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 UBE2NLQ5JXB2 153 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 SAMD5Q5TGI4 173 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 HOGA1Q86XE5 327 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 ANKRD13BQ86YJ7 626 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 KLHL30-AS1Q8NEE0 82 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 CASTOR1Q8WTX7 329 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 SNAPC3Q92966 411 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 FAM103A1Q9BTL3 118 aaKnown RBP9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 METTL1Q9UBP6 276 aaKnown RBP9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 BOLA1Q9Y3E2 137 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 OR2W1Q9Y3N9 320 aa9.06□□□□□ -0.96
CCDC88C-208ENST00000554165 A0A0A6YYH2 397 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 TRAV41A0A0B4J266 112 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 A6NJ64 397 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 NUDT19A8MXV4 375 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 SOX15O60248 233 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 HPGDSO60760 199 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 RBBP9O75884 186 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 TUSC2O75896 110 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 GABARAPO95166 117 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 IGHG4P01861 327 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 HLA-DQB1P01920 261 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 APOA2P02652 100 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 AADACP22760 399 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 PPIFP30405 207 aaKnown RBP9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 DUTP33316 252 aaKnown RBP9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 LUMP51884 338 aaPredicted RBP9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 RPL30P62888 115 aaKnown RBP9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 SSBP2P81877 361 aaPredicted RBP9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 FOXE3Q13461 319 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 ECSCRQ19T08 205 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 DEFB136Q30KP8 78 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 BEAN1Q3B7T3 259 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 C19orf54Q5BKX5 351 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 OR2B11Q5JQS5 317 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 TEX38Q6PEX7 206 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 PDPNQ86YL7 162 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 CROCCP3Q8IVE0 287 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 DDB2Q92466 427 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 FLYWCH2Q96CP2 140 aaKnown RBP9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 S100A16Q96FQ6 103 aaKnown RBP9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 RAX2Q96IS3 184 aa9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 MRPS26Q9BYN8 205 aaKnown RBP9.05□□□□□ -0.96
CCDC88C-208ENST00000554165 PRKDCP78527 4128 aaKnown RBP9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 ARPC1BO15143 372 aaKnown RBP9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 CA2P00918 260 aa9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 PF4P02776 101 aa9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 CRYGBP07316 175 aa9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 CTXN2P0C2S0 81 aa9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 ELK1P19419 428 aa9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 PSMB8P28062 276 aa9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 FCGR2CP31995 323 aa9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 THBS3P49746 956 aa9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 ARPC4P59998 168 aa9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 KIAA0141Q14154 515 aaPredicted RBP9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 MRGPRG-AS1Q2M3A8 158 aa9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 CXorf66Q5JRM2 361 aaPredicted RBP9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 TMEM69Q5SWH9 247 aa9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 IDO2Q6ZQW0 420 aa9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 ZNF695Q8IW36 515 aa9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 MRPL41Q8IXM3 137 aaKnown RBP9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 RNF152Q8N8N0 203 aa9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 WFDC9Q8NEX5 89 aa9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 ABHD5Q8WTS1 349 aa9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 OR5B12Q96R08 314 aa9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 TSNAXQ99598 290 aaKnown RBP9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 MRPS7Q9Y2R9 242 aaKnown RBP9.04□□□□□ -0.96
CCDC88C-208ENST00000554165 TMEM127O75204 238 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 CRYZL1O95825 349 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 ELANEP08246 267 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 OR5H8P0DN80 308 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 CD33P20138 364 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 RFX2P48378 723 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 BRWD1-AS2P59051 145 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 GNB1P62873 340 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 EIF4EBP1Q13541 118 aaPredicted RBP9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 SPCS2Q15005 226 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 ZNF660Q6AZW8 331 aaPredicted RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms