RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 CDK10Q15131 360 aa11.37□□□□□ -0.59
CCDC88C-207ENST00000554051 PLGLAQ15195 96 aa11.37□□□□□ -0.59
CCDC88C-207ENST00000554051 ACTBL2Q562R1 376 aa11.37□□□□□ -0.59
CCDC88C-207ENST00000554051 LIN54Q6MZP7 749 aa11.37□□□□□ -0.59
CCDC88C-207ENST00000554051 GLDNQ6ZMI3 551 aaPredicted RBP11.37□□□□□ -0.59
CCDC88C-207ENST00000554051 TCTEX1D1Q8N7M0 179 aa11.37□□□□□ -0.59
CCDC88C-207ENST00000554051 ZNF383Q8NA42 475 aa11.37□□□□□ -0.59
CCDC88C-207ENST00000554051 ZBTB34Q8NCN2 500 aa11.37□□□□□ -0.59
CCDC88C-207ENST00000554051 PRELID3BQ9Y3B1 194 aa11.37□□□□□ -0.59
CCDC88C-207ENST00000554051 HPGDSO60760 199 aa11.36□□□□□ -0.59
CCDC88C-207ENST00000554051 CD28P10747 220 aa11.36□□□□□ -0.59
CCDC88C-207ENST00000554051 NAT1P18440 290 aa11.36□□□□□ -0.59
CCDC88C-207ENST00000554051 NFYAP23511 347 aaPredicted RBP11.36□□□□□ -0.59
CCDC88C-207ENST00000554051 RCVRNP35243 200 aa11.36□□□□□ -0.59
CCDC88C-207ENST00000554051 F2RL1P55085 397 aa11.36□□□□□ -0.59
CCDC88C-207ENST00000554051 MRPS10P82664 201 aaKnown RBP11.36□□□□□ -0.59
CCDC88C-207ENST00000554051 CD83Q01151 205 aa11.36□□□□□ -0.59
CCDC88C-207ENST00000554051 ZNF660Q6AZW8 331 aaPredicted RBP11.36□□□□□ -0.59
CCDC88C-207ENST00000554051 TEX38Q6PEX7 206 aa11.36□□□□□ -0.59
CCDC88C-207ENST00000554051 KCTD9Q7L273 389 aa11.36□□□□□ -0.59
CCDC88C-207ENST00000554051 OVCH2Q7RTZ1 564 aa11.36□□□□□ -0.59
CCDC88C-207ENST00000554051 DRAXINQ8NBI3 349 aaPredicted RBP11.36□□□□□ -0.59
CCDC88C-207ENST00000554051 OR5H2Q8NGV7 314 aa11.36□□□□□ -0.59
CCDC88C-207ENST00000554051 OSR1Q8TAX0 266 aaPredicted RBP11.36□□□□□ -0.59
CCDC88C-207ENST00000554051 CITED2Q99967 270 aaPredicted RBP11.36□□□□□ -0.59
CCDC88C-207ENST00000554051 OR51J1Q9H342 316 aa11.36□□□□□ -0.59
CCDC88C-207ENST00000554051 ZFP57Q9NU63 452 aa11.36□□□□□ -0.59
CCDC88C-207ENST00000554051 RBMX2Q9Y388 322 aaKnown RBP11.36□□□□□ -0.59
CCDC88C-207ENST00000554051 TCRBV4S1A1TA0A5B7 111 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 PROP1O75360 226 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 PPYP01298 95 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 ELK1P19419 428 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 TBPP20226 339 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 FCGR2CP31995 323 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 DUTP33316 252 aaKnown RBP11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 KIR2DS2P43631 304 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 HERV-K104P61576 105 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 RPS16P62249 146 aaKnown RBP11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 FOXE3Q13461 319 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 TMEM177Q53S58 311 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 KHDC1LQ5JSQ8 128 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 ZNF66Q6ZN08 573 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 GVQW1Q8N7I0 195 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 C11orf44Q8N8P7 122 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 GPX8Q8TED1 209 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 GIMAP1Q8WWP7 306 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 SNAPC3Q92966 411 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 ISOC1Q96CN7 298 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 HARBI1Q96MB7 349 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 EXTL2Q9UBQ6 330 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 FBN3Q75N90 2809 aa11.35□□□□□ -0.59
CCDC88C-207ENST00000554051 RGS5O15539 181 aa11.34□□□□□ -0.59
CCDC88C-207ENST00000554051 TSPAN15O95858 294 aa11.34□□□□□ -0.59
CCDC88C-207ENST00000554051 IGKV1-16P04430 117 aa11.34□□□□□ -0.59
CCDC88C-207ENST00000554051 ELANEP08246 267 aa11.34□□□□□ -0.59
CCDC88C-207ENST00000554051 CRIP2P52943 208 aaPredicted RBP11.34□□□□□ -0.59
CCDC88C-207ENST00000554051 CATR1Q13166 79 aa11.34□□□□□ -0.59
CCDC88C-207ENST00000554051 SPCS2Q15005 226 aa11.34□□□□□ -0.59
CCDC88C-207ENST00000554051 VMA21Q3ZAQ7 101 aa11.34□□□□□ -0.59
CCDC88C-207ENST00000554051 CXorf66Q5JRM2 361 aaPredicted RBP11.34□□□□□ -0.59
CCDC88C-207ENST00000554051 OR4S2Q8NH73 311 aa11.34□□□□□ -0.59
CCDC88C-207ENST00000554051 DDB2Q92466 427 aa11.34□□□□□ -0.59
CCDC88C-207ENST00000554051 HSPB9Q9BQS6 159 aa11.34□□□□□ -0.59
CCDC88C-207ENST00000554051 EHFQ9NZC4 300 aa11.34□□□□□ -0.59
CCDC88C-207ENST00000554051 METTL1Q9UBP6 276 aaKnown RBP11.34□□□□□ -0.59
CCDC88C-207ENST00000554051 IGHV7-81A0A0B4J1V7 117 aa11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 H3BMQ9 156 aa11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 ZNF701M0R085 212 aaPredicted RBP11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 SHOXO15266 292 aa11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 IGHG4P01861 327 aa11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 PF4V1P10720 104 aa11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 AADACP22760 399 aa11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 SSBP1Q04837 148 aaKnown RBP11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 TMEM267Q0VDI3 215 aaPredicted RBP11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 DYRK1AQ13627 763 aa11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 PSG5Q15238 335 aa11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 NSUN5P1Q3KNT7 163 aa11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 SNX29P2Q8IUI4 249 aa11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 RNF152Q8N8N0 203 aa11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 VSTM2AQ8TAG5 236 aa11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 DYNC2LI1Q8TCX1 351 aa11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 NOL4LQ96MY1 436 aaPredicted RBP11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 AIFM2Q9BRQ8 373 aa11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 FBXL15Q9H469 300 aa11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 PARP11Q9NR21 331 aa11.33□□□□□ -0.6
CCDC88C-207ENST00000554051 TRAV41A0A0B4J266 112 aa11.32□□□□□ -0.6
CCDC88C-207ENST00000554051 IGKV1D-13A0A0B4J2D9 117 aa11.32□□□□□ -0.6
CCDC88C-207ENST00000554051 MEIS3P1A6NDR6 274 aa11.32□□□□□ -0.6
CCDC88C-207ENST00000554051 ATP6V0E1O15342 81 aa11.32□□□□□ -0.6
CCDC88C-207ENST00000554051 IGKV1-13P0DP09 117 aa11.32□□□□□ -0.6
CCDC88C-207ENST00000554051 PTHLHP12272 177 aa11.32□□□□□ -0.6
CCDC88C-207ENST00000554051 CNTFRP26992 372 aa11.32□□□□□ -0.6
CCDC88C-207ENST00000554051 S100GP29377 79 aa11.32□□□□□ -0.6
CCDC88C-207ENST00000554051 RPL23AP62750 156 aaKnown RBP11.32□□□□□ -0.6
CCDC88C-207ENST00000554051 CFHR3Q02985 330 aa11.32□□□□□ -0.6
CCDC88C-207ENST00000554051 PYHIN1Q6K0P9 492 aa11.32□□□□□ -0.6
CCDC88C-207ENST00000554051 ZNF562Q6V9R5 426 aa11.32□□□□□ -0.6
CCDC88C-207ENST00000554051 BVESQ8NE79 360 aa11.32□□□□□ -0.6
CCDC88C-207ENST00000554051 SECTM1Q8WVN6 248 aa11.32□□□□□ -0.6
CCDC88C-207ENST00000554051 R3HDM4Q96D70 268 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms