RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 ECI1P42126 302 aa9.82□□□□□ -0.84
SHMT2-209ENST00000553949 THBS3P49746 956 aa9.82□□□□□ -0.84
SHMT2-209ENST00000553949 LY6EQ16553 131 aa9.82□□□□□ -0.84
SHMT2-209ENST00000553949 THNSL2Q86YJ6 484 aa9.82□□□□□ -0.84
SHMT2-209ENST00000553949 CMTM1Q8IZ96 169 aa9.82□□□□□ -0.84
SHMT2-209ENST00000553949 OR5AN1Q8NGI8 311 aa9.82□□□□□ -0.84
SHMT2-209ENST00000553949 RBMXL1Q96E39 390 aaKnown RBP9.82□□□□□ -0.84
SHMT2-209ENST00000553949 ADTRPQ96IZ2 230 aa9.82□□□□□ -0.84
SHMT2-209ENST00000553949 GPHA2Q96T91 129 aa9.82□□□□□ -0.84
SHMT2-209ENST00000553949 HSD17B10Q99714 261 aaKnown RBP9.82□□□□□ -0.84
SHMT2-209ENST00000553949 C7orf50Q9BRJ6 194 aaKnown RBP9.82□□□□□ -0.84
SHMT2-209ENST00000553949 RSRP1Q9BUV0 290 aa9.82□□□□□ -0.84
SHMT2-209ENST00000553949 TCF19Q9Y242 345 aa9.82□□□□□ -0.84
SHMT2-209ENST00000553949 NIPBLQ6KC79 2804 aaeCLIP9.81□□□□□ -0.84
SHMT2-209ENST00000553949 A6NDX4 124 aa9.81□□□□□ -0.84
SHMT2-209ENST00000553949 LINC00473A8K010 186 aa9.81□□□□□ -0.84
SHMT2-209ENST00000553949 CENPXA8MT69 81 aa9.81□□□□□ -0.84
SHMT2-209ENST00000553949 PLA2G10O15496 165 aa9.81□□□□□ -0.84
SHMT2-209ENST00000553949 PGLYRP1O75594 196 aaPredicted RBP9.81□□□□□ -0.84
SHMT2-209ENST00000553949 VENTXO95231 258 aa9.81□□□□□ -0.84
SHMT2-209ENST00000553949 MC5RP33032 325 aa9.81□□□□□ -0.84
SHMT2-209ENST00000553949 RPL30P62888 115 aaKnown RBP9.81□□□□□ -0.84
SHMT2-209ENST00000553949 IFITM3Q01628 133 aa9.81□□□□□ -0.84
SHMT2-209ENST00000553949 HES1Q14469 280 aa9.81□□□□□ -0.84
SHMT2-209ENST00000553949 HNF4GQ14541 408 aa9.81□□□□□ -0.84
SHMT2-209ENST00000553949 SURF2Q15527 256 aaPredicted RBP9.81□□□□□ -0.84
SHMT2-209ENST00000553949 PHLDA2Q53GA4 152 aa9.81□□□□□ -0.84
SHMT2-209ENST00000553949 FBLN7Q53RD9 439 aa9.81□□□□□ -0.84
SHMT2-209ENST00000553949 ZNF66Q6ZN08 573 aa9.81□□□□□ -0.84
SHMT2-209ENST00000553949 ZFAND1Q8TCF1 268 aa9.81□□□□□ -0.84
SHMT2-209ENST00000553949 MARCH1Q8TCQ1 289 aa9.81□□□□□ -0.84
SHMT2-209ENST00000553949 DDB2Q92466 427 aa9.81□□□□□ -0.84
SHMT2-209ENST00000553949 CHIAQ9BZP6 476 aa9.81□□□□□ -0.84
SHMT2-209ENST00000553949 WASHC3Q9Y3C0 194 aa9.81□□□□□ -0.84
SHMT2-209ENST00000553949 H7C2Y5 167 aa9.8□□□□□ -0.84
SHMT2-209ENST00000553949 LYRM1O43325 122 aa9.8□□□□□ -0.84
SHMT2-209ENST00000553949 MOSP00540 346 aa9.8□□□□□ -0.84
SHMT2-209ENST00000553949 APOA2P02652 100 aa9.8□□□□□ -0.84
SHMT2-209ENST00000553949 CTSDP07339 412 aaPredicted RBP9.8□□□□□ -0.84
SHMT2-209ENST00000553949 RNASE1P07998 156 aaKnown RBP9.8□□□□□ -0.84
SHMT2-209ENST00000553949 TMEM11P17152 192 aa9.8□□□□□ -0.84
SHMT2-209ENST00000553949 PI3P19957 117 aa9.8□□□□□ -0.84
SHMT2-209ENST00000553949 CCR6P51684 374 aa9.8□□□□□ -0.84
SHMT2-209ENST00000553949 UBA52P62987 128 aaKnown RBP9.8□□□□□ -0.84
SHMT2-209ENST00000553949 TAGLNQ01995 201 aaKnown RBP9.8□□□□□ -0.84
SHMT2-209ENST00000553949 EBI3Q14213 229 aa9.8□□□□□ -0.84
SHMT2-209ENST00000553949 ABCA11PQ4W5N1 156 aa9.8□□□□□ -0.84
SHMT2-209ENST00000553949 CCBE1Q6UXH8 406 aaPredicted RBP9.8□□□□□ -0.84
SHMT2-209ENST00000553949 KCTD9Q7L273 389 aa9.8□□□□□ -0.84
SHMT2-209ENST00000553949 TMEM219Q86XT9 240 aa9.8□□□□□ -0.84
SHMT2-209ENST00000553949 PDPNQ86YL7 162 aa9.8□□□□□ -0.84
SHMT2-209ENST00000553949 OR2T10Q8NGZ9 312 aa9.8□□□□□ -0.84
SHMT2-209ENST00000553949 TCTEX1D2Q8WW35 142 aa9.8□□□□□ -0.84
SHMT2-209ENST00000553949 ZNF486Q96H40 463 aaPredicted RBP9.8□□□□□ -0.84
SHMT2-209ENST00000553949 EAF1Q96JC9 268 aaPredicted RBP9.8□□□□□ -0.84
SHMT2-209ENST00000553949 SCGB3A2Q96PL1 93 aa9.8□□□□□ -0.84
SHMT2-209ENST00000553949 SLC2A9Q9NRM0 540 aa9.8□□□□□ -0.84
SHMT2-209ENST00000553949 SLC35D1Q9NTN3 355 aa9.8□□□□□ -0.84
SHMT2-209ENST00000553949 PITPNC1Q9UKF7 332 aa9.8□□□□□ -0.84
SHMT2-209ENST00000553949 TBC1D24Q9ULP9 559 aa9.8□□□□□ -0.84
SHMT2-209ENST00000553949 FCGR3BO75015 233 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 IGKV1-16P04430 117 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 RLN1P04808 185 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 RRASP10301 218 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 S100GP29377 79 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 BTCP35070 178 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 PIGPP57054 158 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 SRSF2Q01130 221 aaKnown RBP9.79□□□□□ -0.84
SHMT2-209ENST00000553949 CATR1Q13166 79 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 ASAH1Q13510 395 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 RTL8BQ17RB0 113 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 OR2B11Q5JQS5 317 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 LIAT1Q6ZQX7 453 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 PRIMA1Q86XR5 153 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 Q8N6K4 173 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 OR51H1Q8NH63 302 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 RITA1Q96K30 269 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 RBM14Q96PK6 669 aaKnown RBP9.79□□□□□ -0.84
SHMT2-209ENST00000553949 SLC25A21Q9BQT8 299 aaPredicted RBP9.79□□□□□ -0.84
SHMT2-209ENST00000553949 RTBDNQ9BSG5 229 aaPredicted RBP9.79□□□□□ -0.84
SHMT2-209ENST00000553949 C5orf66Q9H5L9 145 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 GPR132Q9UNW8 380 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 C14orf166Q9Y224 244 aaKnown RBP9.79□□□□□ -0.84
SHMT2-209ENST00000553949 VSIG4Q9Y279 399 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 PRELID3BQ9Y3B1 194 aa9.79□□□□□ -0.84
SHMT2-209ENST00000553949 RNF212BA8MTL3 300 aa9.78□□□□□ -0.84
SHMT2-209ENST00000553949 TRIM77I1YAP6 450 aa9.78□□□□□ -0.84
SHMT2-209ENST00000553949 MPPED1O15442 326 aa9.78□□□□□ -0.84
SHMT2-209ENST00000553949 CHST1O43916 411 aa9.78□□□□□ -0.84
SHMT2-209ENST00000553949 GPR137BO60478 399 aa9.78□□□□□ -0.84
SHMT2-209ENST00000553949 OR2F2O95006 317 aa9.78□□□□□ -0.84
SHMT2-209ENST00000553949 KIR2DS2P43631 304 aa9.78□□□□□ -0.84
SHMT2-209ENST00000553949 BRWD1-AS2P59051 145 aa9.78□□□□□ -0.84
SHMT2-209ENST00000553949 RND3P61587 244 aa9.78□□□□□ -0.84
SHMT2-209ENST00000553949 RBMS2Q15434 407 aaKnown RBP9.78□□□□□ -0.84
SHMT2-209ENST00000553949 C16orf87Q6PH81 154 aa9.78□□□□□ -0.84
SHMT2-209ENST00000553949 TBC1D26Q86UD7 250 aa9.78□□□□□ -0.84
SHMT2-209ENST00000553949 FLYWCH2Q96CP2 140 aaKnown RBP9.78□□□□□ -0.84
SHMT2-209ENST00000553949 SLC25A33Q9BSK2 321 aa9.78□□□□□ -0.84
SHMT2-209ENST00000553949 RAB18Q9NP72 206 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms