RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 AHRRA9YTQ3 701 aa4.67□□□□□ -1.66
LIMA1-215ENST00000552823 MMP23AO75900 390 aa4.67□□□□□ -1.66
LIMA1-215ENST00000552823 IGHG3P01860 377 aa4.67□□□□□ -1.66
LIMA1-215ENST00000552823 DANCRP0C864 163 aa4.67□□□□□ -1.66
LIMA1-215ENST00000552823 CCL3L1P16619 93 aa4.67□□□□□ -1.66
LIMA1-215ENST00000552823 TAGLN2P37802 199 aaKnown RBP4.67□□□□□ -1.66
LIMA1-215ENST00000552823 RND3P61587 244 aa4.67□□□□□ -1.66
LIMA1-215ENST00000552823 SNRPEP62304 92 aaKnown RBP4.67□□□□□ -1.66
LIMA1-215ENST00000552823 SRPXP78539 464 aa4.67□□□□□ -1.66
LIMA1-215ENST00000552823 ID3Q02535 119 aa4.67□□□□□ -1.66
LIMA1-215ENST00000552823 TFF3Q07654 80 aa4.67□□□□□ -1.66
LIMA1-215ENST00000552823 SLC38A11Q08AI6 406 aa4.67□□□□□ -1.66
LIMA1-215ENST00000552823 C1orf185Q5T7R7 199 aa4.67□□□□□ -1.66
LIMA1-215ENST00000552823 SAXO1Q8IYX7 474 aa4.67□□□□□ -1.66
LIMA1-215ENST00000552823 SMIM8Q96KF7 97 aa4.67□□□□□ -1.66
LIMA1-215ENST00000552823 TMEM56Q96MV1 263 aa4.67□□□□□ -1.66
LIMA1-215ENST00000552823 DYNLRB1Q9NP97 96 aa4.67□□□□□ -1.66
LIMA1-215ENST00000552823 LYRM2Q9NU23 88 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-215ENST00000552823 SLC39A9Q9NUM3 307 aa4.67□□□□□ -1.66
LIMA1-215ENST00000552823 TMEM56-RWDD3S4R434 201 aa4.67□□□□□ -1.66
LIMA1-215ENST00000552823 ENSAO43768 121 aaKnown RBP4.66□□□□□ -1.66
LIMA1-215ENST00000552823 ACTL6BO94805 426 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 IGKV3-15P01624 115 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 SNCAP37840 140 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 CST9LP1Q5W188 147 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 ZNF787Q6DD87 383 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 ODF3L1Q8IXM7 274 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 LHX4Q969G2 390 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 R3HDM4Q96D70 268 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 QTRT1Q9BXR0 403 aaKnown RBP4.66□□□□□ -1.66
LIMA1-215ENST00000552823 DECR2Q9NUI1 292 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 LIN7CQ9NUP9 197 aaKnown RBP4.66□□□□□ -1.66
LIMA1-215ENST00000552823 ATPIF1Q9UII2 106 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 WASF3Q9UPY6 502 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 SLC25A15Q9Y619 301 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 ABCA12Q86UK0 2595 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 RBFOX3A6NFN3 312 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 IGLV2-14P01704 120 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 IRF2P14316 349 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 FGF7P21781 194 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 ZNF134P52741 427 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 ERVK11-1P61568 191 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 CATR1Q13166 79 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 IL34Q6ZMJ4 242 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 SSX7Q7RTT5 188 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 HAPLN4Q86UW8 402 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 DOLPP1Q86YN1 238 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 OR5D13Q8NGL4 314 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 OR4A16Q8NH70 328 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 SAT2Q96F10 170 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-215ENST00000552823 MEGF10Q96KG7 1140 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 PARP11Q9NR21 331 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 PLSCR4Q9NRQ2 329 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 TRAV38-1A0A0B4J264 116 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 FAM90A10PA6NDY2 464 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 FAM90A18PA6NE21 464 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 FAM90A16PA6NEW6 464 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 OOEPA6NGQ2 149 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 FAM90A20PA6NIJ5 464 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 FAM90A8PA6NJQ4 464 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 FAM90A7PA6NKC0 464 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 FAM90A22PA8MWA6 464 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 FAM90A12PA8MX19 464 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 FAM90A5PA8MXJ8 464 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 FAM90A23PA8MXZ1 464 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 TRIM77I1YAP6 450 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 SCAF4O95104 1147 aaKnown RBP4.66□□□□□ -1.66
LIMA1-215ENST00000552823 PLAUP00749 431 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 OR4A8P0C604 315 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 OR9G9P0C7N8 305 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 FAM90A15PP0C7V4 464 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 SEC11BP0C7V7 166 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 FAM90A13PP0C7W8 464 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 FAM90A14PP0C7W9 464 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 FAM90A24PP0C7X0 464 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 LYL1P12980 280 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 CEACAM1P13688 526 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 GATA2P23769 480 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-215ENST00000552823 CD82P27701 267 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 GRNP28799 593 aaKnown RBP4.66□□□□□ -1.66
LIMA1-215ENST00000552823 MLANAQ16655 118 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 Q8IYB0 196 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 ZNF709Q8N972 641 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 SVIPQ8NHG7 77 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 DTD1Q8TEA8 209 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 PBDC1Q9BVG4 233 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 ZFP57Q9NU63 452 aa4.66□□□□□ -1.66
LIMA1-215ENST00000552823 A0A0G2JNJ9 132 aa4.65□□□□□ -1.66
LIMA1-215ENST00000552823 GAPDHP04406 335 aaKnown RBP4.65□□□□□ -1.66
LIMA1-215ENST00000552823 NQO2P16083 231 aa4.65□□□□□ -1.66
LIMA1-215ENST00000552823 HOXA1P49639 335 aaPredicted RBP4.65□□□□□ -1.66
LIMA1-215ENST00000552823 SULT1A1P50225 295 aa4.65□□□□□ -1.66
LIMA1-215ENST00000552823 BSPH1Q075Z2 132 aa4.65□□□□□ -1.66
LIMA1-215ENST00000552823 ZNF146Q15072 292 aa4.65□□□□□ -1.66
LIMA1-215ENST00000552823 ADIRFQ15847 76 aa4.65□□□□□ -1.66
LIMA1-215ENST00000552823 AVPI1Q5T686 147 aa4.65□□□□□ -1.66
LIMA1-215ENST00000552823 MOB3BQ86TA1 216 aa4.65□□□□□ -1.66
LIMA1-215ENST00000552823 FAM90A1Q86YD7 464 aa4.65□□□□□ -1.66
LIMA1-215ENST00000552823 SPACA3Q8IXA5 215 aa4.65□□□□□ -1.66
LIMA1-215ENST00000552823 MARVELD3Q96A59 401 aa4.65□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms