RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 NBR2O15453 112 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 SNX3O60493 162 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 ZNF254O75437 659 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 GATBO75879 557 aaKnown RBP4.81□□□□□ -1.64
LIMA1-204ENST00000549064 RPP14O95059 124 aaKnown RBP4.81□□□□□ -1.64
LIMA1-204ENST00000549064 CCNB2O95067 398 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 TRBV12-3P01733 135 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 TRGV3P03979 118 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 FABP3P05413 133 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 CCL1P22362 96 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 SLC2A5P22732 501 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 IL3RAP26951 378 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 MAGEA2P43356 314 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 CRIP2P52943 208 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-204ENST00000549064 ZNF45Q02386 682 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 PDZK1IP1Q13113 114 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 APOFQ13790 326 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 GUCA2BQ16661 112 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 C5orf64Q2M2E5 130 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 DEFB135Q30KP9 77 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 PAN3Q58A45 887 aaKnown RBP4.81□□□□□ -1.64
LIMA1-204ENST00000549064 UNQ5815/PRO19632Q6UWF5 114 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 SIGLEC15Q6ZMC9 328 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 RDH10Q8IZV5 341 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 CHST4Q8NCG5 386 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 TEX47Q8TBZ9 253 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 DYDC1Q8WWB3 177 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 NIPSNAP1Q9BPW8 284 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 ZNF251Q9BRH9 671 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 GGTLC1Q9BX51 225 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 YIPF3Q9GZM5 350 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 CNOT2Q9NZN8 540 aaKnown RBP4.81□□□□□ -1.64
LIMA1-204ENST00000549064 ZNF581Q9P0T4 197 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 GAB2Q9UQC2 676 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 NUBP2Q9Y5Y2 271 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 CCDC182A6NF36 153 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 H3BN98 237 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 C15orf65H3BRN8 121 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 SYT7O43581 403 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 EDF1O60869 148 aaKnown RBP4.8□□□□□ -1.64
LIMA1-204ENST00000549064 E2F6O75461 281 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 HMGA2P52926 109 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 NANOS2P60321 138 aaKnown RBP4.8□□□□□ -1.64
LIMA1-204ENST00000549064 SSBP2P81877 361 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-204ENST00000549064 HTD2P86397 168 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 ACTBL2Q562R1 376 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 SLC35D3Q5M8T2 416 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 FAHD1Q6P587 224 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 SLC25A48Q6ZT89 311 aaKnown RBP4.8□□□□□ -1.64
LIMA1-204ENST00000549064 PPP1R27Q86WC6 154 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 LAX1Q8IWV1 398 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 TCEANCQ8N8B7 351 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 ZNF439Q8NDP4 499 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 LFNGQ8NES3 379 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 OR10A7Q8NGE5 316 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 MCUR1Q96AQ8 359 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 ADAT3Q96EY9 351 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-204ENST00000549064 RDH12Q96NR8 316 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 CST11Q9H112 138 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 FBXL15Q9H469 300 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 MOB1AQ9H8S9 216 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 NEK6Q9HC98 313 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 ZNF355PQ9NSJ1 428 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 APLNQ9ULZ1 77 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 ERGIC3Q9Y282 383 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 LRP1BQ9NZR2 4599 aa4.8□□□□□ -1.64
LIMA1-204ENST00000549064 DMBT1Q9UGM3 2413 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-204ENST00000549064 A0A087X0K7 114 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 LOC102724200A0A096LPH7 203 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-204ENST00000549064 A0A0B4J203 849 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 KRTAP9-6A0A140TA67 174 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 KRTAP9-7A8MTY7 169 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 H3BNX3 289 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 M0R2N4 97 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 NDUFA3O95167 84 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 SERPINA3P01011 423 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 SLPIP03973 132 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 ATF1P18846 271 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 BMI1P35226 326 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 ZNF137PP52743 207 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 CXCR4P61073 352 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 GINS1Q14691 196 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 KRTAP15-1Q3LI76 137 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 CT45A1Q5HYN5 189 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 ZNF660Q6AZW8 331 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-204ENST00000549064 PYHIN1Q6K0P9 492 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 CD200R1LQ6Q8B3 271 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 ZNF322Q6U7Q0 402 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-204ENST00000549064 ZNF645Q8N7E2 425 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 GVQW1Q8N7I0 195 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 TCTEX1D1Q8N7M0 179 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 OR10V1Q8NGI7 309 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 OR2K2Q8NGT1 345 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 CT45A3Q8NHU0 189 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 CNIH3Q8TBE1 160 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 ASB17Q8WXJ9 295 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 ARL11Q969Q4 196 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 SGK494Q96LW2 274 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 OPALINQ96PE5 141 aa4.79□□□□□ -1.64
LIMA1-204ENST00000549064 CLCC1Q96S66 551 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms